2024 Publications
Albacete S, Sancho G, Azpiazu C, Sgolastra F, Rodrigo A, Bosch J. 2024. Exposure to sublethal levels of insecticide-fungicide mixtures affect reproductive success and population growth rates in the solitary bee Osmia cornuta. Environment International, 190(July):108919. DOI:10.1016/j.envint.2024.108919
Alfonso P, Butković A, Fernández R, Riesgo A, Elena SF. 2024. Unveiling the hidden viromes across the animal tree of life: insights from a taxonomic classification pipeline applied to invertebrates of 31 metazoan phyla. mSystems, 9(5). DOI:10.1128/msystems.00124-24
Allentoft ME, Sikora M, Refoyo-Martínez A, Irving-Pease EK, Fischer A, Barrie W, Ingason A, Stenderup J, Sjögren KG, Pearson A, Sousa da Mota B, Schulz Paulsson B, Halgren A, Macleod R, Jørkov MLS, Demeter F, Sørensen L, Nielsen PO, Henriksen RA, Vimala T, McColl H, Margaryan A, Ilardo M, Vaughn A, Fischer Mortensen M, Nielsen AB, Ulfeldt Hede M, Johannsen NN, Rasmussen P, Vinner L, Renaud G, Stern A, Jensen TZT, Scorrano G, Schroeder H, Lysdahl P, Ramsøe AD, Skorobogatov A, Schork AJ, Rosengren A, Ruter A, Outram A, Timoshenko AA, Buzhilova A, Coppa A, Zubova A, Silva AM, Hansen AJ, Gromov A, Logvin A, Gotfredsen AB, Henning Nielsen B, González-Rabanal B, Lalueza-Fox C, McKenzie CJ, Gaunitz C, Blasco C, Liesau C, Martinez-Labarga C, Pozdnyakov DV, Cuenca-Solana D, Lordkipanidze DO, En'shin D, Salazar-García DC, Price TD, Borić D, Kostyleva E, Veselovskaya EV, Usmanova ER, Cappellini E, Brinch Petersen E, Kannegaard E, Radina F, Eylem Yediay F, Duday H, Gutiérrez-Zugasti I, Merts I, Potekhina I, Shevnina I, Altinkaya I, Guilaine J, Hansen J, Aura Tortosa JE, Zilhão J, Vega J, Buck Pedersen K, Tunia K, Zhao L, Mylnikova LN, Larsson L, Metz L, Yepiskoposyan L, Pedersen L, Sarti L, Orlando L, Slimak L, Klassen L, Blank M, González-Morales M, Silvestrini M, Vretemark M, Nesterova MS, Rykun M, Rolfo MF, Szmyt M, Przybyła M, Calattini M, Sablin M, Dobisíková M, Meldgaard M, Johansen M, Berezina N, Card N, Saveliev NA, Poshekhonova O, Rickards O, Lozovskaya OV, Gábor O, Uldum OC, Aurino P, Kosintsev P, Courtaud P, Ríos P, Mortensen P, Lotz P, Persson P, Bangsgaard P, de Barros Damgaard P, Vang Petersen P, Martinez PP, Włodarczak P, Smolyaninov RV, Maring R, Menduiña R, Badalyan R, Iversen R, Turin R, Vasilyev S, Wåhlin S, Borutskaya S, Skochina S, Sørensen SA, Andersen SH, Jørgensen T, Serikov YB, Molodin VI, Smrcka V, Merts V, Appadurai V, Moiseyev V, Magnusson Y, Kjær KH, Lynnerup N, Lawson DJ, Sudmant PH, Rasmussen S, Korneliussen TS, Durbin R, Nielsen R, Delaneau O, Werge T, Racimo F, Kristiansen K, Willerslev E. 2024. Population genomics of post-glacial western Eurasia. Nature, 625(7994):301-311. DOI:10.1038/s41586-023-06865-0
Aranda S, Muntané G, Vilella E. 2024. Coexpression network analysis of the adult brain sheds light on the pathogenic mechanism of DDR1 in schizophrenia and bipolar disorder. Translational Psychiatry, 14(1):112. DOI:10.1038/s41398-024-02823-0
Balart-García P, Bradford TM, Beasley-Hall PG, Polak S, Cooper SJB, Fernández R. 2024. Highly dynamic evolution of the chemosensory system driven by gene gain and loss across subterranean beetles. Molecular Phylogenetics and Evolution, 194(February):108027. DOI:10.1016/j.ympev.2024.108027
Barquera R, Del Castillo-Chávez O, Nägele K, Pérez-Ramallo P, Hernández-Zaragoza DI, Szolek A, Rohrlach AB, Librado P, Childebayeva A, Bianco RA, Penman BS, Acuña-Alonzo V, Lucas M, Lara-Riegos JC, Moo-Mezeta ME, Torres-Romero JC, Roberts P, Kohlbacher O, Warinner C, Krause J. 2024. Ancient genomes reveal insights into ritual life at Chichén Itzá. Nature, 630(March 2023). DOI:10.1038/s41586-024-07509-7
Barrios-Núñez I, Martínez-Redondo GI, Medina-Burgos P, Cases I, Fernández R, Rojas AM. 2024. Decoding functional proteome information in model organisms using protein language models. NAR Genomics and Bioinformatics, 6(3):1-25. DOI:10.1093/nargab/lqae078
Benvenuto G, Leone S, Astoricchio E, Bormke S, Jasek S, D'Aniello E, Kittelmann M, McDonald K, Hartenstein V, Baena V, Escrivà H, Bertrand S, Schierwater B, Burkhardt P, Ruiz-Trillo I, Jékely G, Ullrich-Lüter J, Lüter C, D'Aniello S, Arnone MI, Ferraro F. 2024. Evolution of the ribbon-like organization of the Golgi apparatus in animal cells. Cell Reports, 43(3):113791. DOI:10.1016/j.celrep.2024.113791
Bista B, González-Rodelas L, Álvarez-González L, Wu ZQ, Montiel EE, Lee LS, Badenhorst DB, Radhakrishnan S, Literman R, Navarro-Dominguez B, Iverson JB, Orozco-Arias S, González J, Ruiz-Herrera A, Valenzuela N. 2024. De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes. Genome Research, 1-17. DOI:10.1101/gr.279443.124
Böhne A, Fernández R, Leonard JA, McCartney AM, McTaggart S, Melo-Ferreira J, Monteiro R, Oomen RA, Vinnere Pettersson O, Struck TH. 2024. Contextualising samples: supporting reference genomes of European biodiversity through sample and associated metadata collection. npj Biodiversity, 3(1):26. DOI:10.1038/s44185-024-00053-7
Bonacolta AM, Krause-Massaguer J, Smit NJ, Sikkel PC, del Campo J. 2024. A new and widespread group of fish apicomplexan parasites. Current Biology, 34(12):2748-2755.e3. DOI:10.1016/j.cub.2024.04.084
Bonacolta AM, Visscher PT, del Campo J, White III RA. 2024. The eukaryome of modern microbialites reveals distinct colonization across aquatic ecosystems. npj Biofilms and Microbiomes, 10(1):78. DOI:10.1038/s41522-024-00547-z
Boscaro V, James ER, Fiorito R, Del Campo J, Scheffrahn RH, Keeling PJ. 2024. Updated classification of the phylum Parabasalia. Journal of Eukaryotic Microbiology, 71(4). DOI:10.1111/jeu.13035
Bulduk BK, Tortajada J, Valiente-Pallejà A, Callado LF, Torrell H, Vilella E, Meana JJ, Muntané G, Martorell L. 2024. High number of mitochondrial DNA alterations in postmortem brain tissue of patients with schizophrenia compared to healthy controls. Psychiatry Research, 337(February):115928. DOI:10.1016/j.psychres.2024.115928
Bulduk BK, Tortajada J, Torres-Egurrola L, Valiente-Pallejà A, Martínez-Leal R, Vilella E, Torrell H, Muntané G, Martorell L. 2024. High frequency of mitochondrial DNA rearrangements in the peripheral blood of adults with intellectual disability. Journal of Intellectual Disability Research, 1-16. DOI:10.1111/jir.13197
Burriel-Carranza B, Talavera A, Mochales-Riaño G, Al Hashmi S, Al Busaidi A, Els J, Carranza S. 2024. First record of dermal fluorescence in the desert-adapted Stenodactylus and Trigonodactylus geckos. Journal of Arid Environments, 222(April):105161. DOI:10.1016/j.jaridenv.2024.105161
Burriel-Carranza B, Mochales-Riaño G, Talavera A, Els J, Estarellas M, Al Saadi S, Urriago Suarez JD, Olsson PO, Matschiner M, Carranza S. 2024. Clinging on the brink: Whole genomes reveal human‐induced population declines and severe inbreeding in the Critically Endangered Emirati Leaf‐toed Gecko ( Asaccus caudivolvulus ). Molecular Ecology, 33(15). DOI:10.1111/mec.17451
Burriel-Carranza B, Tejero-Cicuéndez H, Carné A, Mochales-Riaño G, Talavera A, Al Saadi S, Els J, Šmíd J, Tamar K, Tarroso P, Carranza S. Integrating genomics and biogeography to unravel the origin of a mountain biota: The case of a reptile endemicity hotspot in Arabia. Systematic Biology. DOI: 10.1093/sysbio/syae032
Corominas M, Marquès-Bonet T, Arnedo MA, Bayés M, Belmonte J, Escrivà H, Fernández R, Gabaldón T, Garnatje T, Germain J, Niell M, Palero F, Pons J, Puigdomènech P, Initiative For The Earth BioGenome Project TC; Catalan initiative for the Earth BioGenome Project; Arroyo V, Cuevas-Caballé C, Obiol JF, Gut I, Gut M, Hidalgo O, Izquierdo-Arànega G, Pérez-Sorribes L, Righi E, Riutort M, Vallès J, Rozas J, Alioto T, Guigó R. 2024. The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics. NAR Genomics and Bioinformatics, 6(3). DOI:10.1093/nargab/lqae075
Dapporto L, Menchetti M, Dincă V, Talavera G, Garcia-Berro A, D'Ercole J, Hebert PD, Vila R. 2024. The genetic legacy of the Quaternary ice ages for West Palearctic butterflies. Science Advances, 10(38):1-13. DOI:10.1126/sciadv.adm8596
Decroly T, Vila R, Lohse K, Mackintosh A. 2024. Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence. Molecular Biology and Evolution, 41(7):2024.01.20.576444. DOI:10.1093/molbev/msae124
D'Ercole J, Dapporto L, Opler P, Schmidt CB, Ho C, Menchetti M, Zakharov EV, Burns JM, Hebert PDN. 2024. A genetic atlas for the butterflies of continental Canada and United States. PLOS ONE, 19(4):e0300811. DOI:10.1371/journal.pone.0300811
Deulofeu-Capo O, Sebastián M, Auladell A, Cardelús C, Ferrera I, Sánchez O, Gasol JM. 2024. Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa. ISME Communications, 4(1). DOI:10.1093/ismeco/ycae066
Diemar MG, Vinken M, Teunis M, Krul CAM, Busquet F, Zajac JD, Kandarova H, Corvi R, Rosso MZ, Kharina A, Bryndum LS, Santillo M, Bloch D, Kucheryavenko O, Panagiotakos D, Rogiers V, Beekhuijzen M, Giusti A, Najjar A, Courage C, Koenig T, Kolle S, Boonen H, Dhalluin S, Boberg J, Müller BP, Kukic P, Ritskes-Hoitinga M, Grasselli E, Zietek T, Stoddart G, Heusinkveld HJ, Castell JV, Benfenati E, Yang H, Perera S, Paini A, Kramer NI, Hartung T, Janssen M, Fritsche E, Jennen DGJ, Piumatti M, Rathman J, Marusczyk J, Milec L, Roggen EL. 2024. Report of the First ONTOX Stakeholder Network Meeting: Digging Under the Surface of ONTOX Together With the Stakeholders. Alternatives to Laboratory Animals, 52(2):117-131. DOI:10.1177/02611929231225730
Duran-Nebreda S, Bentley RA, Vidiella B, Spiridonov A, Eldredge N, O’Brien, MJ, Valverde S. 2024. On the multiscale dynamics of punctuated evolution. Trends in Ecology & Evolution, 39(8):734-744. DOI:10.1016/j.tree.2024.05.003
Duran‐Nebreda S, Vidiella B, Spiridonov A, Eldredge N, O'Brien MJ, Bentley RA, Valverde S. 2024. The many ways toward punctuated evolution. Palaeontology, 67(5). DOI:10.1111/pala.12731
Farrus N, Maestro JL, Piulachs MD. 2024. CHMP4B contributes to maintaining the follicular cells integrity in the panoistic ovary of the cockroach Blattella germanica. Biology of the Cell, 116(9):1-13. DOI:10.1111/boc.202400010
Fiore L, Arderiu J, Martí-Sarrias A, Turpín I, Pareja RI, Navarro A, Holubiec M, Bianchelli J, Falzone T, Spelzini G, Scicolone G, Acosta S. 2024. Early Unguided Human Brain Organoid Neurovascular Niche Modeling into the Permissive Chick Embryo Chorioallantoic Membrane. Journal of Visualized Experiments, 204:1-12. DOI:10.3791/65710
Fromont LA, Moldes M, Baudis M, Brookes AJ, Navarro A, Rambla J. 2024 Twelve quick tips for deploying a Beacon. PLOS Computational Biology, 20(3):e1011817. DOI:10.1371/journal.pcbi.1011817
Galindo LJ, Mathur V, Frost H, Torruella G, Richards TA, Irwin NAT. 2024. Transcriptomics of Diphyllatea (CRuMs)from South Pacific crater lakes confirm new cryptic clades. Journal of Eukaryotic Microbiology, (September):1-7. DOI:10.1111/jeu.13060
Gàlvez-Morante A, Guéguen L, Natsidis P, Telford MJ, Richter DJ. 2024. Dollo Parsimony Overestimates Ancestral Gene Content Reconstructions. Genome Biology and Evolution, 16(4). DOI:10.1093/gbe/evae062
Ghouri S, Reich MS, Lopez-Mañas R, Talavera G, Bowen GJ, Vila R, Talla VNK, Collins SC, Martins DJ, Bataille CP. 2024. A hydrogen isoscape for tracing the migration of herbivorous lepidopterans across the Afro‐Palearctic range. Rapid Communications in Mass Spectrometry, 38(3):1-23. DOI:10.1002/rcm.9675
Gunasekaram C, Battiston F, Sadekar O, Padilla-Iglesias C, van Noordwijk MA, Furrer R, Manica A, Bertranpetit J, Whiten A, van Schaik CP, Vinicius L, Migliano AB. 2024. Population connectivity shapes the distribution and complexity of chimpanzee cumulative culture. Science, 386(6724):920-925. DOI:10.1126/science.adk3381
Hake KH, West PT, McDonald K, Laundon D, Reyes-Rivera J, Garcia De Las Bayonas A, Feng C, Burkhardt P, Richter DJ, Banfield JF, King N. 2024. A large colonial choanoflagellate from Mono Lake harbors live bacteria. mBio, 1-11 . DOI:10.1128/mbio.01623-24
Hämmerle M, Guellil M, Trgovec-Greif L, Cheronet O, Sawyer S, Ruiz-Gartzia I, Lizano E, Rymbekova A, Gelabert P, Bernardi P, Han S, Rattei T, Schuenemann VJ, Marques-Bonet T, Guschanski K, Calvignac-Spencer S, Pinhasi R, Kuhlwilm M. 2024. Screening great ape museum specimens for DNA viruses. Scientific Reports, 14(1):29806. DOI:10.1038/s41598-024-80780-w
Han S, de Filippo C, Parra G, Meneu JR, Laurent R, Frandsen P, Hvilsom C, Gronau I, Marques-Bonet T, Kuhlwilm M, Andrés AM. 2024. Deep genetic substructure within bonobos. Current Biology, 1-8. DOI:10.1016/j.cub.2024.09.043
He R, Al-Tamimi J, Sánchez-Benavides G, Montaña-Valverde G, Domingo Gispert J, Grau-Rivera O, Suárez-Calvet M, Minguillon C, Fauria K, Navarro A, Hinzen W. 2024. Atypical cortical hierarchy in Aβ-positive older adults and its reflection in spontaneous speech. Brain Research, 1830:148806. DOI:10.1016/j.brainres.2024.148806
Hermosilla-Albala N, Silva FE, Cuadros-Espinoza S, Fontsere C, Valenzuela-Seba A, Pawar H, Gut M, Kelley JL, Ruibal-Puertas S, Alentorn-Moron P, Faella A, Lizano E, Farias I, Hrbek T, Valsecchi J, Gut IG, Rogers J, Farh KK, Kuderna LFK, Marques-Bonet T, Boubli JP. 2024. Whole genomes of Amazonian uakari monkeys reveal complex connectivity and fast differentiation driven by high environmental dynamism. Communications Biology, 7(1):1-14. DOI:10.1038/s42003-024-06901-3
Holt CC, del Campo J, Keeling PJ. 2024. Source and variation of the amazing live Sea-Monkey microbiome. PLOS ONE, 19(8):e0308763. DOI:10.1371/journal.pone.0308763
Hünemeier T. 2024. Biogeographic Perspectives on Our Species’ Genetic Diversification. Molecular Biology and Evolution, 41(3). DOI:10.1093/molbev/msae029
Indacochea A, Guitart T, Boada A, Peg V, Quer A, Laayouni H, Condal L, Espinosa P, Manzano JL, Gebauer F. 2024. CSDE1 Intracellular Distribution as a Biomarker of Melanoma Prognosis. International Journal of Molecular Sciences, 25(4):2319. DOI:10.3390/ijms25042319
James C, Trevisan-Herraz M, Juan D, Rico D. 2024. Evolutionary analysis of gene ages across TADs associates chromatin topology with whole-genome duplications. Cell Reports, 43(4):113895. DOI:10.1016/j.celrep.2024.113895
Karamperis K, Katz S, Melograna F, Ganau FP, Van Steen K, Patrinos GP, Lao O. 2024. Genetic ancestry in population pharmacogenomics unravels distinct geographical patterns related to drug toxicity. iScience, 27(10):110916. DOI:10.1016/j.isci.2024.110916
Kéfi S, Génin A, Garcia-Mayor A, Guirado E, Cabral JS, Berdugo M, Guerber J, Solé R, Maestre FT. 2024. Self-organization as a mechanism of resilience in dryland ecosystems. Proceedings of the National Academy of Sciences, 121(6):2017. DOI:10.1073/pnas.2305153121
Kelly M, Cuomo CA, Beukema W, Carranza S, Erens J, Foubert M, Li Z, Lötters S, Schulz V, Steinfartz S, Van Praet S, Veith M, Pasmans F, Martel A. 2024. High phenotypic diversity correlated with genomic variation across the European Batrachochytrium salamandrivorans epizootic. PLOS Pathogens, 20(10):e1012579. DOI:10.1371/journal.ppat.1012579
Kopp J, Rovai A, Ott M, Wedemeyer H, Tiede A, Böhmer HJ, Marques T, Langemeier J, Bohne J, Krooss SA. 2024. A transposable element prevents severe hemophilia B and provides insights into the evolution of new- and old world primates. PLOS ONE, 19(10):e0312303. DOI:10.1371/journal.pone.0312303
Larivière D, Abueg L, Brajuka N, Gallardo-Alba C, Grüning B, Ko BJ, Ostrovsky A, Palmada-Flores M, Pickett BD, Rabbani K, Antunes A, Balacco JR, Chaisson MJP, Cheng H, Collins J, Couture M, Denisova A, Fedrigo O, Gallo GR, Giani AM, Gooder GM, Horan K, Jain N, Johnson C, Kim H, Lee C, Marques-Bonet T, O'Toole B, Rhie A, Secomandi S, Sozzoni M, Tilley T, Uliano-Silva M, van den Beek M, Williams RW, Waterhouse RM, Phillippy AM, Jarvis ED, Schatz MC, Nekrutenko A, Formenti G. 2024. Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology, 5:10-13. DOI:10.1038/s41587-023-02100-3
Leger MM, Gawryluk RMR. 2024. Evolution: A gene-rich mitochondrial genome sheds light on the last eukaryotic common ancestor. Current Biology, 34(16):R776-R779. DOI:10.1016/j.cub.2024.06.067
Librado P, Tressières G, Chauvey L, Fages A, Khan N, Schiavinato S, Calvière-Tonasso L, Kusliy MA, Gaunitz C, Liu X, Wagner S, Der Sarkissian C, Seguin-Orlando A, Perdereau A, Aury JM, Southon J, Shapiro B, Bouchez O, Donnadieu C, Collin YRH, Gregersen KM, Jessen MD, Christensen K, Claudi-Hansen L, Pruvost M, Pucher E, Vulic H, Novak M, Rimpf A, Turk P, Reiter S, Brem G, Schwall C, Barrey É, Robert C, Degueurce C, Horwitz LK, Klassen L, Rasmussen U, Kveiborg J, Johannsen NN, Makowiecki D, Makarowicz P, Szeliga M, Ilchyshyn V, Rud V, Romaniszyn J, Mullin VE, Verdugo M, Bradley DG, Cardoso JL, Valente MJ, Antunes MT, Ameen C, Thomas R, Ludwig A, Marzullo M, Prato O, Gianni GB, Tecchiati U, Granado J, Schlumbaum A, Deschler-Erb S, Mráz MS, Boulbes N, Gardeisen A, Mayer C, Döhle HJ, Vicze M, Kosintsev PA, Kyselý R, Peške L, O'Connor T, Ananyevskaya E, Shevnina I, Logvin A, Kovalev AA, Iderkhangai TO, Sablin MV, Dashkovskiy PK, Graphodatsky AS, Merts I, Merts V, Kasparov AK, Pitulko VV, Onar V, Öztan A, Arbuckle BS, McColl H, Renaud G, Khaskhanov R, Demidenko S, Kadieva A, Atabiev B, Sundqvist M, Lindgren G, López-Cachero FJ, Albizuri S, Trbojević Vukičević T, Rapan Papeša A, Burić M, Rajić Šikanjić P, Weinstock J, Vilaró DA, Codina F, Dalmau CG, de Llorens JM, Pou J, de Prado G, Sanmartí J, Kallala N, Torres JR, Maraoui-Telmini B, Belarte Franco MC, Valenzuela-Lamas S, Zazzo A, Lepetz S, Duchesne S, Alexeev A, Bayarsaikhan J, Houle JL, Bayarkhuu N, Turbat T, Crubézy É, Shingiray I, Mashkour M, Berezina NY, Korobov DS, Belinskiy A, Kalmykov A, Demoule JP, Reinhold S, Hansen S, Wallner B, Roslyakova N, Kuznetsov PF, Tishkin AA, Wincker P, Kanne K, Outram A, Orlando L. 2024. Widespread horse-based mobility arose around 2,200 BCE in Eurasia. Nature, 631(8022):819-825. DOI:10.1038/s41586-024-07597-5
Librado P. 2024. Reconstructing generation intervals over time. Nature Reviews Genetics, 25(11):745-746 . DOI:10.1038/s41576-024-00766-2
Lohse K, Vila R, Hayward A, Laetsch DR, Harnqvist S. 2024. The genome sequence of the Essex Skipper butterfly, Thymelicus lineola (Ochsenheimer, 1808). Wellcome Open Research, 9:452. DOI:10.12688/wellcomeopenres.22847.1
Long C, Deng J, Nguyen J, Liu YY, Alm EJ, Solé R, Saavedra S. 2024. Structured community transitions explain the switching capacity of microbial systems. Proceedings of the National Academy of Sciences, 121(6):1-9. DOI:10.1073/pnas.2312521121
Mantica F, Iñiguez LP, Marquez Y, Permanyer J, Torres-Mendez A, Cruz J, Franch-Marro X, Tulenko F, Burguera D, Bertrand S, Doyle T, Nouzova M, Currie PD, Noriega FG, Escriva H, Arnone MI, Albertin CB, Wotton KR, Almudi I, Martin D, Irimia M. 2024. Evolution of tissue-specific expression of ancestral genes across vertebrates and insects. Nature Ecology & Evolution, 8(6):1140-1153. DOI:10.1038/s41559-024-02398-5
Marques V, Hinojosa JC, Dapporto L, Talavera G, Stefanescu C, Gutiérrez D, Vila R. 2024. The opposed forces of differentiation and admixture across glacial cycles in the butterfly Aglais urticae. Molecular Ecology, 33(7):1-15. DOI:10.1111/mec.17304
Mathov Y, Nissim-Rafinia M, Leibson C, Galun N, Marques-Bonet T, Kandel A, Liebergal M, Meshorer E, Carmel L. 2024. Inferring DNA methylation in non-skeletal tissues of ancient specimens. Nature Ecology & Evolution. DOI:10.1038/s41559-024-02571-w
Maull V, Solé R. 2024. Biodiversity as a firewall to engineered microbiomes for restoration and conservation. Royal Society Open Science, 11(6). DOI:10.1098/rsos.231526
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, De Pooter T, Joris G, Strazisar M, Wood JMD, Herron KE, Seehausen O, Watts PC, Shaw F, Davey RP, Minotto A, Fernández JM, Böhne A, Alegria C, Alioto T, Alves PC, Amorim IR, Aury JM, Backstrom N, Baldrian P, Baltrunaite L, Barta E, BedHom B, Belser C, Bergsten J, Bergsten L, Bilandija H, Binzer-Panchal M, Bista I, Blaxter M, Borges PAV, Dias GB, Bosse M, Brown T, Bruggmann R, Buena-Atienza E, Burgin J, Buzan E, Cariani A, Casadei N, Chiara M, Chozas S, Čiampor F Jr, Crottini A, Cruaud C, Cruz F, Dalen L, De Biase A, Del Campo J, Delic T, Dennis AB, Derks MFL, Diroma MA, Djan M, Duprat S, Eleftheriadi K, Feulner PGD, Flot JF, Forni G, Fosso B, Fournier P, Fournier-Chambrillon C, Gabaldon T, Garg S, Gissi C, Giupponi L, Gomez-Garrido J, González J, Grilo ML, Grüning B, Guerin T, Guiglielmoni N, Gut M, Haesler MP, Hahn C, Halpern B, Harrison PW, Heintz J, Hindrikson M, Höglund J, Howe K, Hughes GM, Istace B, Cock MJ, Janžekovič F, Jonsson ZO, Joye-Dind S, Koskimäki JJ, Krystufek B, Kubacka J, Kuhl H, Kusza S, Labadie K, Lähteenaro M, Lantz H, Lavrinienko A, Leclère L, Lopes RJ, Madsen O, Magdelenat G, Magoga G, Manousaki T, Mappes T, Marques JP, Redondo GIM, Maumus F, McCarthy SA, Megens HJ, Melo-Ferreira J, Mendes SL, Montagna M, Moreno J, Mosbech MB, Moura M, Musilova Z, Myers E, Nash WJ, Nater A, Nicholson P, Niell M, Nijland R, Noel B, Noren K, Oliveira PH, Olsen RA, Ometto L, Oomen RA, Ossowski S, Palinauskas V, Palsson S, Panibe JP, Pauperio J, Pavlek M, Payen E, Pawlowska J, Pellicer J, Pesole G, Pimenta J, Pippel M, Pirttilä AM, Poulakakis N, Rajan J, M C Rego R, Resendes R, Resl P, Riesgo A, Rodin-Morch P, Soares AER, Fernandes CR, Romeiras MM, Roxo G, Rüber L, Ruiz-Lopez MJ, Saarma U, da Silva LP, Sim-Sim M, Soler L, Sousa VC, Santos CS, Spada A, Stefanovic M, Steger V, Stiller J, Stöck M, Struck TH, Sudasinghe H, Tapanainen R, Tellgren-Roth C, Trindade H, Tukalenko Y, Urso I, Vacherie B, Van Belleghem SM, Van Oers K, Vargas-Chavez C, Velickovic N, Vella N, Vella A, Vernesi C, Vicente S, Villa S, Pettersson OV, Volckaert FAM, Voros J, Wincker P, Winkler S, Ciofi C, Waterhouse RM, Mazzoni CJ. 2024. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. npj Biodiversity, 3(1):28. DOI:10.1038/s44185-024-00054-6
Medaglia S, Reig-Palou J, Bellés A, Moreno-Ruiz N, Rodríguez J, Armengol X, Aróstegui JI, Armengol L, Guillén JJ, Laayouni H, Casals F. 2024. The Excess of Carriers in Rare Disorders Suggests a Nonpathogenic Effect for Most Variants of Uncertain Significance. Clinical Genetics, 1-5. DOI:10.1111/cge.14642
Nagai A, Lemes RB, Mill JG, Pereira AC, Marques RE, Hünemeier T. 2024. The seroconversion history to SARS-CoV-2 in Indigenous people from Brazil – the interplay between exposure, vaccination, and tuberculosis. Frontiers in Immunology, 15(July):1-9. DOI:10.3389/fimmu.2024.1359066
Obiol A, del Campo J, de Vargas C, Mahé F, Massana R. 2024. How marine are Marine Stramenopiles (MAST)? A cross-system evaluation. FEMS Microbiology Ecology. DOI:10.1093/femsec/fiae130
Oehlert AM, Garza J, Nixon S, Frank L, Folkerts EJ, Stieglitz JD, Lu C, Heuer RM, Benetti DD, Del Campo J, Gomez FA, Grosell M. 2024. Implications of dietary carbon incorporation in fish carbonates for the global carbon cycle. Science of The Total Environment, 916:169895. DOI:10.1016/j.scitotenv.2024.169895
Pujal D, Escudero J, Cabrera P, Bos L, Vargas-Chávez C, Fernández R, Bellés X, Maestro JL. 2024. Functional redundancy of the three insulin receptors of cockroaches. Insect Biochemistry and Molecular Biology, 172(July):104161. DOI:10.1016/j.ibmb.2024.104161
Richards TA, Eme L, Archibald JM, Leonard G, Coelho SM, de Mendoza A, Dessimoz C, Dolezal P, Fritz-Laylin LK, Gabaldón T, Hampl V, Kops GJPL, Leger MM, Lopez-Garcia P, McInerney JO, Moreira D, Muñoz-Gómez SA, Richter DJ, Ruiz-Trillo I, Santoro AE, Sebé-Pedrós A, Snel B, Stairs CW, Tromer EC, van Hooff JJE, Wickstead B, Williams TA, Roger AJ, Dacks JB, Wideman JG. 2024. Reconstructing the last common ancestor of all eukaryotes. PLOS Biology, 22(11):e3002917. DOI:10.1371/journal.pbio.3002917
Rispo F, De Negri Atanasio G, Demori I, Costa G, Marchese E, Perera-Del-Rosario S, Serrano-Candelas E, Palomino-Schätzlein M, Perata E, Robino F, Ferrari PF, Ferrando S, Letasiova S, Markus J, Zanotti-Russo M, Grasselli E. 2024. An extensive review on phenolic compounds and their potential estrogenic properties on skin physiology. Frontiers in Cell and Developmental Biology, 11(January):1-16. DOI:10.3389/fcell.2023.1305835
Roca-Ayats N, Maceda I, Bruque CD, Martínez-Gil N, Garcia-Giralt N, Cozar M, Mellibovsky L, Van Hul W, Lao O, Grinberg D, Balcells S. 2024. Evolutionary and functional analyses of LRP5 in archaic and extant modern humans. Human Genomics, 18(1):53. DOI:10.1186/s40246-024-00616-6
Rodríguez-Fernández B, Sánchez-Benavides G, Genius P, Minguillon C, Fauria K, De Vivo I, Navarro A, Molinuevo JL, Gispert JD, Sala-Vila A, Vilor-Tejedor N, Crous-Bou M; ALFA study. 2024. Association between telomere length and cognitive function among cognitively unimpaired individuals at risk of Alzheimer’s disease. Neurobiology of Aging, 141(June):140-150. DOI:10.1016/j.neurobiolaging.2024.05.015
Rojo I, Escudero N, Fernández R, Fernández-Álvarez FÁ. 2024. First record of the alien land flatworm Marionfyfea adventor (Platyhelminthes: Geoplanidae) in the Iberian Peninsula. Zootaxa, 5397(2):291-294. DOI:10.11646/zootaxa.5397.2.10
Sardanyés J, Ivančić F, Vidiella B. 2024. Identifying regime shifts, transients and late warning signals for proactive ecosystem management. Biological Conservation, 290(January). DOI:10.1016/j.biocon.2023.110433
Sasso S, Saag L, Spros R, Beneker O, Molinaro L, Biagini SA, Lehouck A, Van De Vijver K, Hui R, D'Atanasio E, Kushniarevich A, Kabral H, Metspalu E, Guellil M, Ali MQA, Geypen J, Hoebreckx M, Berk B, De Winter N, Driesen P, Pijpelink A, Van Damme P, Scheib CL, Deschepper E, Deckers P, Snoeck C, Dewilde M, Ervynck A, Tambets K, Larmuseau MHD, Kivisild T. 2024. Capturing the fusion of two ancestries and kinship structures in Merovingian Flanders. Proceedings of the National Academy of Sciences, 121(27). DOI:10.1073/pnas.2406734121
Scheib CL, Hui R, Rose AK, D'Atanasio E, Inskip SA, Dittmar J, Cessford C, Griffith SJ, Solnik A, Wiseman R, Neil B, Biers T, Harknett SJ, Sasso S, Biagini SA, Runfeldt G, Duhig C, Evans C, Metspalu M, Millett MJ, O'Connell TC, Robb JE, Kivisild T. 2024. Low Genetic Impact of the Roman Occupation of Britain in Rural Communities. Molecular Biology and Evolution, 41(9):1-18. DOI:10.1093/molbev/msae168
Serradell JM, Lorenzo-Salazar JM, Flores C, Lao O, Comas D. 2024. Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations. Genome Biology, 25(1):201. DOI:10.1186/s13059-024-03341-4
Shabardina V, Dharamshi JE, Ara PS, Antó M, Bascón FJ, Suga H, Marshall W, Scazzocchio C, Casacuberta E, Ruiz-Trillo I. 2024. Ichthyosporea: a window into the origin of animals. Communications Biology, 7(1):915. DOI:10.1038/s42003-024-06608-5
Sinigaglia B, Escudero J, Biagini SA, Garcia-Calleja J, Moreno J, Dobon B, Acosta S, Mondal M, Walsh S, Aguileta G, Vallès M, Forrow S, Martin-Caballero J, Migliano AB, Bertranpetit J, Muñoz FJ, Bosch E. 2024. Exploring Adaptive Phenotypes for the Human Calcium-Sensing Receptor Polymorphism R990G. Molecular Biology and Evolution, 41(2):1-18. DOI:10.1093/molbev/msae015
Solé R, Maull V, Amor DR, Mauri JP, Núria C-P. 2024. Synthetic Ecosystems: From the Test Tube to the Biosphere. ACS Synthetic Biology. DOI:10.1021/acssynbio.4c00384
Solé R, Kempes CP, Corominas-Murtra B, De Domenico M, Kolchinsky A, Lachmann M, Libby E, Saavedra S, Smith E, Wolpert D. 2024. Fundamental constraints to the logic of living systems. Interface Focus, 14(5):7-9. DOI:10.1098/rsfs.2024.0010
Steenwyk JL, Martínez-Redondo GI, Buida TJ 3rd, Gluck-Thaler E, Shen XX, Gabaldón T, Rokas A, Fernández R. 2024. PhyKIT: A Multitool for Phylogenomics. Current Protocols, 4(11):1-38. DOI:10.1002/cpz1.70016
Tahami MS, Vargas-Chavez C, Poikela N, Coronado-Zamora M, González J, Kankare M. 2024. Transposable elements in Drosophila montana from harsh cold environments. Mobile DNA, 15(1):18. DOI:10.1186/s13100-024-00328-7
Talavera A, Palmada-Flores M, Burriel-Carranza B, Valbuena-Ureña E, Mochales-Riaño G, Adams DC, Tejero-Cicuéndez H, Soler-Membrives A, Amat F, Guinart D, Carbonell F, Obon E, Marquès-Bonet T, Carranza S. 2024. Genomic insights into the Montseny brook newt (Calotriton arnoldi), a Critically Endangered glacial relict. iScience, 27(1):108665. DOI:10.1016/j.isci.2023.108665
Talavera A, Valbuena-Ureña E, Burriel-Carranza B, Mochales-Riaño G, Adams DC, Amat F, Carbonell F, Carranza S. 2024. Integrative systematic revision of the Montseny brook newt (Calotriton arnoldi), with the description of a new subspecies. PeerJ, 12:e17550. DOI:10.7717/peerj.17550
Toro-Delgado E, Vila R, Talavera G, Turner EC, Hayes MP, Horrocks NPC, Bladon AJ. 2024. Regional differences in thermoregulation between two European butterfly communities. Journal of Animal Ecology, 93(2):183-195. DOI:10.1111/1365-2656.14039
Vilà-Valls L, Abdeli A, Lucas-Sánchez M, Bekada A, Calafell F, Benhassine T, Comas D. 2024. Understanding the genomic heterogeneity of North African Imazighen: from broad to microgeographical perspectives. Scientific Reports, 14(1):9979. DOI:10.1038/s41598-024-60568-8
Villena-Alemany C, Mujakić I, Fecskeová LK, Woodhouse J, Auladell A, Dean J, Hanusová M, Socha M, Gazulla CR, Ruscheweyh HJ, Sunagawa S, Silva Kavagutti V, Andrei AŞ, Grossart HP, Ghai R, Koblížek M, Piwosz K. 2024. Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Microbiome, 12(1):65. DOI:10.1186/s40168-024-01786-0
Yee SW, Ferrández-Peral L, Alentorn-Moron P, Fontsere C, Ceylan M, Koleske ML, Handin N, Artegoitia VM, Lara G, Chien HC, Zhou X, Dainat J, Zalevsky A, Sali A, Brand CM, Wolfreys FD, Yang J, Gestwicki JE, Capra JA, Artursson P, Newman JW, Marquès-Bonet T, Giacomini KM. 2024. Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates. Nature Communications, 15(1):4380. DOI:10.1038/s41467-024-48569-7
Zavadska D, Henry N, Auladell A, Berney C, Richter DJ. 2024. Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes. PLoS One, 19(6):e0303697. DOI:10.1371/journal.pone.0303697
Zhang L, Leonard N, Passaro R, Luan MS, Van Tuyen P, Han LTN, Cam NH, Vogelnest L, Lynch M, Fine AE, Nga NTT, Van Long N, Rawson BM, Behie A, Van Nguyen T, Le MD, Nadler T, Walter L, Marques-Bonet T, Hofreiter M, Li M, Liu Z, Roos C. 2024. Genomic adaptation to small population size and saltwater consumption in the critically endangered Cat Ba langur. Nature Communications, 15(1):8531. DOI:10.1038/s41467-024-52811-7