2016 ISI PUBLICATIONS

Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. 2016. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology, 17(1). DOI:10.1186/s13059-016-1090-1

Adamowicz SJ, Chain FJ, Clare EL, Deiner K, Dincă V, Elías-Gutiérrez M, Hausmann A, Hogg ID, Kekkonen M, Lijtmaer DA, Naaum A, Steinke D, Valdez-Moreno M, Van der Bank M, Wilson JJ, Xu J. 2016. From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference. Genome, 59(9):v-ix. DOI:10.1139/gen-2016-0159

Andújar C, Faille A, Pérez-González S, Zaballos JP, Vogler AP, Ribera I. 2016. Gondwanian relicts and oceanic dispersal in a cosmopolitan radiation of euedaphic ground beetles. Molecular Phylogenetics and Evolution, 99:235-246. DOI:10.1016/j.ympev.2016.03.013

Arroyo AS, López-Escardó D, de Vargas C, Ruiz-Trillo I. 2016. Hidden diversity of Acoelomorpha revealed through metabarcoding. Biology Letters, 12(9):20160674. DOI: 10.1098/rsbl.2016.0674.

Aterido A, Julià A, Ferrándiz C, Puig L, Fonseca E, Fernández-López E, Dauden E, Sánchez-Carazo JL, López-Estebaranz JL, Moreno-Ramírez D, Vanaclocha F, Herrera E, de la Cueva P, Dand N, Palau N, Alonso A, López-Lasanta M, Tortosa R, García-Montero A, Codó L, Gelpí JL, Bertranpetit J, Absher D, Capon F, Myers RM, Barker JN, Marsal S. 2016. Genome-Wide Pathway Analysis Identifies Genetic Pathways Associated with Psoriasis. Journal of Investigative Dermatology, 136(3):593-602. DOI:10.1016/j.jid.2015.11.026

Bergland AO, Tobler R, González J, Schmidt P, Petrov D. 2016. Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster. Molecular Ecology, 25(5):1157-1174. DOI:10.1111/mec.13455

Bonforti A, Duran-Nebreda S, Montañez R, Solé R. 2016. Spatial self-organization in hybrid models of multicellular adhesion. Chaos, 26(10). DOI:10.1063/1.4965992

Bruno D, Gutiérrez-Cánovas C, Sánchez-Fernández D, Velasco J, Nilsson C. 2016. Impacts of environmental filters on functional redundancy in riparian vegetation. Journal of Applied Ecology, 53(3):846-855. DOI:10.1111/1365-2664.12619

Buzdugan L, Kalisch M, Navarro A, Schunk D, Fehr E, Bühlmann P. 2016. Assessing statistical significance in multivariable genome wide association analysis. Bioinformatics, 32(13):1990-2000. DOI:10.1093/bioinformatics/btw128

Cagan A, Theunert C, Laayouni H, Santpere G, Pybus M, Casals F, Prüfer K, Navarro A, Marques-Bonet T, Bertranpetit J, Andrés AM. 2016. Natural selection in the great apes. Molecular Biology and Evolution, 33(12):3268-3283. DOI:10.1093/molbev/msw215

Calafell F, Anglada R, Bonet N, González-Ruiz M, Prats-Muñoz G, Rasal R, Lalueza-Fox C, Bertranpetit J, Malgosa A, Casals F. 2016. An assessment of a massively parallel sequencing approach for the identification of individuals from mass graves of the Spanish Civil War (1936–1939). Electrophoresis, 37(21):2841-2847. DOI:10.1002/elps.201600180

Carbonell-Ballestero M, Garcia-Ramallo E, Montañez R, Rodriguez-Caso C, Macía J. 2016. Dealing with the genetic load in bacterial synthetic biology circuits: Convergences with the Ohm’s law. Nucleic Acids Research, 44(1):496-507. DOI:10.1093/nar/gkv1280

Carranza S, Bauer AM. 2016. Margarita Metallinou (1985-2015). Zootaxa, 4132(4):598-600. DOI:10.11646/zootaxa.4132.4.13

Carvalho J, Sotelo G, Galindo J, Faria R. 2016. Genetic characterization of flat periwinkles (Littorinidae) from the Iberian Peninsula reveals interspecific hybridization and different degrees of differentiation. Biological Journal of the Linnean Society, 118(3):503-519. DOI:10.1111/bij.12762

Chavan R, Shinde P, Girkar K, Madage R, Chowdhary A. 2016. Assessment of Anti-Influenza activity and hemagglutination inhibition of Plumbago indica and Allium sativum extracts. Pharmacognosy Research, 8(2):105. DOI:10.4103/0974-8490.172562

Colobran R, Franco-Jarava C, Martín-Nalda A, Baena N, Gabau E, Padilla N, de la Cruz X, Pujol-Borrell R, Comas D, Soler-Palacín P, Hernández-González M. 2016. Novel Mutations Causing C5 Deficiency in Three North-African Families. Journal of Clinical Immunology, 36(4):388-396. DOI:10.1007/s10875-016-0275-4

Corrales E, Navarro A, Cuenca P, Campos D. 2016. Candidate gene study reveals DRD1 and DRD2 as putative interacting risk factors for youth depression. Psychiatry Research, 244:71-77. DOI:10.1016/j.psychres.2016.07.032

Dapporto L, Stefanini I, Rivero D, Polsinelli M, Capretti P, De Marchi P, Viola R, Turillazzi S, Cavalieri D. 2016. Social wasp intestines host the local phenotypic variability of Saccharomyces cerevisiae strains. Yeast, 33(7):277-287. DOI:10.1002/yea.3173

de Lorenzo V, Marlière P, Solé R. 2016. Bioremediation at a global scale: from the test tube to planet Earth. Microbial Biotechnology, 9(5):618-625. DOI:10.1111/1751-7915.12399

de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kühl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andrés AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T. 2016. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science, 354(6311):477-481. DOI:10.1126/science.aag2602

de Miguel C, Linsler F, Casanova J, Franch-Marro X. 2016. Genetic basis for the evolution of organ morphogenesis: The case of spalt and cut in the development of insect trachea. Development (Cambridge), 143(19):3615-3622. DOI:10.1242/dev.134924

de Pous P, Simó-Riudalbas M, Els J, Jayasinghe S, Amat F, Carranza S. 2016. Phylogeny and biogeography of Arabian populations of the Persian Horned Viper Pseudocerastes persicus (Duméril, Bibron & Duméril, 1854). Zoology in the Middle East, 62(3):231-238. DOI:10.1080/09397140.2016.1202896

de Pous P, Machado L, Metallinou M, Červenka J, Kratochvíl L, Paschou N, Mazuch T, Šmíd J, Simó-Riudalbas M, Sanuy D, Carranza S. 2016. Taxonomy and biogeography of Bunopus spatalurus (Reptilia; Gekkonidae) from the Arabian Peninsula. Journal of Zoological Systematics and Evolutionary Research, 54(1):67-81. DOI:10.1111/jzs.12107

Dopazo J, Amadoz A, Bleda M, Garcia-Alonso L, Alemán A, García-García F, Rodriguez JA, Daub JT, Muntané G, Rueda A, Vela-Boza A, López-Domingo FJ, Florido JP, Arce P, Ruiz-Ferrer M, Méndez-Vidal C, Arnold TE, Spleiss O, Alvarez-Tejado M, Navarro A, Bhattacharya SS, Borrego S, Santoyo-López J, Antiñolo G. 2016. 267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation. Molecular Biology and Evolution, 33(5):1205-1218. DOI:10.1093/molbev/msw005

Duran-Nebreda S, Solé R V. 2016. Toward Synthetic Spatial Patterns in Engineered Cell Populations with Chemotaxis. ACS Synthetic Biology, 5(7):654-661. DOI:10.1021/acssynbio.5b00254

Duran-Nebreda S, Bonforti A, Montañez R, Valverde S, Solé R. 2016. Emergence of proto-organisms from bistable stochastic differentiation and adhesion. Journal of the Royal Society Interface, 13(117). DOI:10.1098/rsif.2016.0108

Elias-Neto M, Belles X. 2016. Tergal and pleural structures contribute to the formation of ectopic prothoracic wings in cockroaches. Royal Society Open Science, 3(8). DOI:10.1098/rsos.160347

Engelken J, Espadas G, Mancuso FM, Bonet N, Scherr AL, Jímenez-Álvarez V, Codina-Solà M, Medina-Stacey D, Spataro N, Stoneking M, Calafell F, Sabidó E, Bosch E. 2016. Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution, 33(3):738-754. DOI:10.1093/molbev/msv267

Esquerdo M, Grau-Bové X, Garanto A, Toulis V, Garcia-Monclús S, Millo E, López-Iniesta MJ, Abad-Morales V, Ruiz-Trillo I, Marfany G. 2016. Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles. PLoS ONE, 11(3):1-18. DOI:10.1371/journal.pone.0150364

Faherty SL, Luis Villanueva-Cañas J, Klopfer PH, Albà MM, Yoder AD. 2016. Gene expression profiling in the hibernating primate, Cheirogaleus medius. Genome Biology and Evolution, 8(8):2413-2426. DOI:10.1093/gbe/evw163

Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilà C, Marques-Bonet T, Godinho R, Yue B, Wayne RK. 2016. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research, 26(2):163-173. DOI:10.1101/gr.197517.115

Fernandez-Nicolas A, Belles X. 2016. CREB-binding protein contributes to the regulation of endocrine and developmental pathways in insect hemimetabolan pre-metamorphosis. Biochimica et Biophysica Acta - General Subjects, 1860(3):508-515. DOI:10.1016/j.bbagen.2015.12.008

Fernández-Sampedro MA, Invergo BM, Ramon E, Bertranpetit J, Garriga P. 2016. Functional role of positively selected amino acid substitutions in mammalian rhodopsin evolution. Scientific Reports, 6:1-13. DOI:10.1038/srep21570

Flesch BK, Morar B, Comas D, Muñiz-Diaz E, Nogués N, Kalaydjieva L. 2016. The AQP1 del601G mutation in different European Romani (Gypsy) populations. Blood Transfusion, 14(6):580-581. DOI:10.2450/2016.0274-15

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J. 2016. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. PLoS Genetics, 12(3):1-23. DOI:10.1371/journal.pgen.1005851

Froufe E, Prié V, Faria J, Ghamizi M, Gonçalves DV, Gürlek ME, Karaouzas I, Kebapçi Ü, Şereflişan H, Sobral C, Sousa R, Teixeira A, Varandas S, Zogaris S, Lopes-Lima M. 2016. Phylogeny, phylogeography, and evolution in the Mediterranean region: News from a freshwater mussel (Potomida, Unionida). Molecular Phylogenetics and Evolution, 100:322-332. DOI:10.1016/j.ympev.2016.04.030

Froufe E, Gonçalves DV, Teixeira A, Sousa R, Varandas S, Ghamizi M, Zieritz A, Lopes-Lima M. 2016. Who lives where? Molecular and morphometric analyses clarify which Unio species (Unionida, Mollusca) inhabit the southwestern Palearctic. Organisms Diversity and Evolution, 16(3):597-611. DOI:10.1007/s13127-016-0262-x

Gallego A, Melé M, Balcells I, García-Ramallo E, Torruella-Loran I, Fernández-Bellon H, Abelló T, Kondova I, Bontrop R, Hvilsom C, Navarro A, Marquès-Bonet T, Espinosa-Parrilla Y. 2016. Functional Implications of Human-Specific Changes in Great Ape microRNAs. PLoS ONE, 11(4):1-20. DOI:10.1371/journal.pone.0154194

Garcia-Casademont E, Steels L. 2016. Insight grammar learning. Journal of Cognitive Science, 17(1):27-62. DOI:10.17791/jcs.2016.17.1.27

Garcia-Porta J, Šmíd J, Sol D, Fasola M, Carranza S. 2016. Testing the island effect on phenotypic diversification: Insights from the Hemidactylus geckos of the Socotra Archipelago. Scientific Reports, 6(March):1-12. DOI:10.1038/srep23729

Garcia-Porta J, Morales HE, Gómez-Díaz E, Sindaco R, Carranza S. 2016. Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago. Molecular Phylogenetics and Evolution, 98:288-299. DOI:10.1016/j.ympev.2016.02.007

García-Vázquez D, Bilton DT, Alonso R, Benetti CJ, Garrido J, Valladares LF, Ribera I. 2016. Reconstructing ancient Mediterranean crossroads in Deronectes diving beetles. Journal of Biogeography, 43(8):1533-1545. DOI:10.1111/jbi.12740

García-Vázquez D, Ribera I. 2016. The origin of widespread species in a poor dispersing lineage (diving beetle genus Deronectes). PeerJ, 2016(9). DOI:10.7717/peerj.2514

Gelabert P, Sandoval-Velasco M, Olalde I, Fregel R, Rieux A, Escosa R, Aranda C, Paaijmans K, Mueller I, Gilbert MT, Lalueza-Fox C. 2016. Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences of the United States of America, 113(41):11495-11500. DOI:10.1073/pnas.1611017113

Gold DA, Grabenstatter J, De Mendoza A, Riesgo A, Ruiz-Trillo I, Summons RE. 2016. Sterol and genomic analyses validate the sponge biomarker hypothesis. Proceedings of the National Academy of Sciences of the United States of America, 113(10):2684-2689. DOI:10.1073/pnas.1512614113

Gómez-Zurita J, Cardoso A, Coronado I, De la Cadena G, Jurado-Rivera JA, Maes JM, Montelongo T, Nguyen DT, Papadopoulou A. 2016. High-throughput biodiversity analysis: Rapid assessment of species richness and ecological interactions of Chrysomelidae (Coleoptera) in the tropics. ZooKeys, 2016(597):3-26. DOI:10.3897/zookeys.597.7065

Gonçalves DV, Pereira P, Godinho R, Lopes S, Velo-Antón G, Brito JC. 2016. Development of 23 microsatellite loci for Boulenger’s agama (Agama boulengeri) with partial cross-amplification in other Agama species. Amphibia Reptilia, 37(2):246-252. DOI:10.1163/15685381-00003048

Gutiérrez D, Vila R, Wilson RJ. 2016. Asymmetric constraints on limits to species ranges influence consumer-resource richness over an environmental gradient. Global Ecology and Biogeography, 25(12):1477-1488. DOI:10.1111/geb.12510

Haber M, Mezzavilla M, Xue Y, Comas D, Gasparini P, Zalloua P, Tyler-Smith C.  2016. Genetic evidence for an origin of the Armenians from Bronze Age mixing of multiple populations. European Journal of Human Genetics, 24(6):931-936. DOI:10.1038/ejhg.2015.206

Hanappe P, Dunlop R, Maes A, Steels L, Duval N. 2016. Agroecology: A Fertile Field for Human Computation. Human Computation, 3(1):225-233. DOI:10.15346/hc.v3i1.13

Hartasánchez DA, Brasó-Vives M, Fuentes-Díaz J, Vallès-Codina O, Navarro A. 2016. SeDuS: Segmental duplication simulator. Bioinformatics, 32(1):148-150. DOI:10.1093/bioinformatics/btv481

Hawlitschek O, Morinière J, Dunz A, Franzen M, Rödder D, Glaw F, Haszprunar G. 2016. Comprehensive DNA barcoding of the herpetofauna of Germany. Molecular Ecology Resources, 16(1):242-253. DOI:10.1111/1755-0998.12416

Hawlitschek O, Scherz MD, Straube N, Glaw F. 2016. Resurrection of the Comoran fish scale gecko Geckolepis humbloti Vaillant, 1887 reveals a disjunct distribution caused by natural overseas dispersal. Organisms Diversity and Evolution, 16(1):289-298. DOI:10.1007/s13127-015-0255-1

Hawlitschek O, Wang-Claypool CY, Scherz MD, Montfort L, Soumille O, Glaw F. 2016. New size record of the snake genus Liophidium by the island endemic L. Mayottensis (Squamata, lamprophiidae). Spixiana, 39(2):287-288.

Hernández-Roldán JL, Dapporto L, Dincă V, Vicente JC, Hornett EA, Šíchová J, Lukhtanov VA, Talavera G, Vila R. 2016. Integrative analyses unveil speciation linked to host plant shift in Spialia butterflies. Molecular ecology, 25(17):4267-4284. DOI:10.1111/mec.13756

Hidalgo-Galiana A, Monge M, Biron DG, Canals F, Ribera I, Cieslak A. 2016. Protein expression parallels thermal tolerance and ecologic changes in the diversification of a diving beetle species complex. Heredity, 116(1):114-123. DOI:10.1038/hdy.2015.80

Julià A, González I, Fernández-Nebro A, Blanco F, Rodriguez L, González A, Cañete JD, Maymó J, Alperi-López M, Olivé A, Corominas H, Martínez-Taboada V, Erra A, Sánchez-Fernández S, Alonso A, Lopez-Lasanta M, Tortosa R, Codó L, Gelpi JL, García-Montero AC, Bertranpetit J, Absher D, Bridges SL Jr, Myers RM, Tornero J, Marsal S. 2016. A genome-wide association study identifies SLC8A3 as a susceptibility locus for ACPA-positive rheumatoid arthritis. Rheumatology (United Kingdom), 55(6):1106-1111. DOI:10.1093/rheumatology/kew035

Kaminski LA, Iserhard CA, Freitas AVL. 2016. Thisbe silvestre sp. nov. (Lepidoptera: Riodinidae): A new myrmecophilous butterfly from the Brazilian Atlantic Forest. Austral Entomology, 55(2):138-146. DOI:10.1111/aen.12159

Koblmüller S, Vilà C, Lorente-Galdos B, Dabad M, Ramirez O, Marques-Bonet T, Wayne RK, Leonard JA. 2016. Whole mitochondrial genomes illuminate ancient intercontinental dispersals of grey wolves (Canis lupus). Journal of Biogeography, 43(9):1728-1738. DOI:10.1111/jbi.12765

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S. 2016. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530(7591):429-433. DOI:10.1038/nature16544

Kuhlwilm M, de Manuel M, Nater A, Greminger MP, Krützen M, Marques-Bonet T. 2016. Evolution and demography of the great apes. Current Opinion in Genetics and Development, 41:124-129. DOI:10.1016/j.gde.2016.09.005

Lazaridis I, Nadel D, Rollefson G, Merrett DC, Rohland N, Mallick S, Fernandes D, Novak M, Gamarra B, Sirak K, Connell S, Stewardson K, Harney E, Fu Q, Gonzalez-Fortes G, Jones ER, Roodenberg SA, Lengyel G, Bocquentin F, Gasparian B, Monge JM, Gregg M, Eshed V, Mizrahi AS, Meiklejohn C, Gerritsen F, Bejenaru L, Blüher M, Campbell A, Cavalleri G, Comas D, Froguel P, Gilbert E, Kerr SM, Kovacs P, Krause J, McGettigan D, Merrigan M, Merriwether DA, O'Reilly S, Richards MB, Semino O, Shamoon-Pour M, Stefanescu G, Stumvoll M, Tönjes A, Torroni A, Wilson JF, Yengo L, Hovhannisyan NA, Patterson N, Pinhasi R, Reich D. 2016. Genomic insights into the origin of farming in the ancient Near East. Nature, 536(7617):419-424. DOI:10.1038/nature19310

Lobon I, Tucci S, de Manuel M, Ghirotto S, Benazzo A, Prado-Martinez J, Lorente-Galdos B, Nam K, Dabad M, Hernandez-Rodriguez J, Comas D, Navarro A, Schierup MH, Andres AM, Barbujani G, Hvilsom C, Marques-Bonet T. 2016. Demographic history of the genus Pan inferred from whole mitochondrial genome reconstructions. Genome Biology and Evolution, 8(6):2020-2030. DOI:10.1093/gbe/evw124

López-Panadès E, Casacuberta E. 2016. NAP-1, Nucleosome assembly protein 1, a histone chaperone involved in Drosophila telomeres. Insect Biochemistry and Molecular Biology, 70:111-115. DOI:10.1016/j.ibmb.2015.11.011

Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simões ZL. 2016. MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (A pis mellifera L.). Insect Molecular Biology, 25(3):216-226. DOI:10.1111/imb.12214

Macia J, Manzoni R, Conde N, Urrios A, de Nadal E, Solé R, Posas F. 2016. Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia. PLoS Computational Biology, 12(2):1-24. DOI:10.1371/journal.pcbi.1004685

Maia JP, Carranza S, Harris DJ. 2016. Comments on the Systematic Revision of Adeleid Haemogregarines: Are More Data Needed?. Journal of Parasitology, 102(5):549. DOI:10.1645/15-930

Maia JP, Harris DJ, Carranza S, Goméz-Díaz E. 2016. Assessing the diversity, host-specificity and infection patterns of apicomplexan parasites in reptiles from Oman, Arabia. Parasitology, 143(13):1730-1747. DOI:10.1017/S0031182016001372

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. 2016. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature, 538(7624):201-206. DOI:10.1038/nature18964

Mansilla A, Martin FA, Martin D, Ferrus A. 2016. Ligand-independent requirements of steroid receptors EcR and USP for cell survival. Cell Death and Differentiation, 23(3):405-416. DOI:10.1038/cdd.2015.108

Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, Vilà C, Marques-Bonet T, Schnabel RD, Wayne RK, Lohmueller KE. 2016. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proceedings of the National Academy of Sciences of the United States of America, 113(1):152-157. DOI:10.1073/pnas.1512501113

Martínez-Cruz B, Mendizabal I, Harmant C, de Pablo R, Ioana M, Angelicheva D, Kouvatsi A, Makukh H, Netea MG, Pamjav H, Zalán A, Tournev I, Marushiakova E, Popov V, Bertranpetit J, Kalaydjieva L, Quintana-Murci L, Comas D. 2016. Origins, admixture and founder lineages in European Roma. European Journal of Human Genetics, 24(6):937-943. DOI:10.1038/ejhg.2015.201

Merenciano M, Ullastres A, de Cara MAR, Barrón MG, González J. 2016. Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila. PLoS Genetics, 12(8):1-24. DOI:10.1371/journal.pgen.1006249

Mieth B, Kloft M, Rodríguez JA, Sonnenburg S, Vobruba R, Morcillo-Suárez C, Farré X, Marigorta UM, Fehr E, Dickhaus T, Blanchard G, Schunk D, Navarro A, Müller KR. 2016. Combining multiple hypothesis testing with machine learning increases the statistical power of genome-wide association studies. Scientific Reports, 6(November):1-14. DOI:10.1038/srep36671

Mondal M, Casals F, Xu T, Dall'Olio GM, Pybus M, Netea MG, Comas D, Laayouni H, Li Q, Majumder PP, Bertranpetit J. 2016. Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation. Nature Genetics, 48(9):1066-1070. DOI:10.1038/ng.3621

Morgan PPG. 2016. Mitochondria Research Society/United Mitochondrial Disease Foundation Meeting Abstracts. Mitochondrion, 31:89-117. DOI:10.1016/j.mito.2016.08.010

Morinière J, Van Dam MH, Hawlitschek O, Bergsten J, Michat MC, Hendrich L, Ribera I, Toussaint EF, Balke M. 2016. Phylogenetic niche conservatism explains an inverse latitudinal diversity gradient in freshwater arthropods. Scientific Reports, 6(May):1-12. DOI:10.1038/srep26340

Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaëns T, Efetov KA, Hebert PD, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HC. 2016. Species-level para- and polyphyly in DNA barcode gene trees: Strong operational bias in European Lepidoptera. Systematic Biology, 65(6):1024-1040. DOI:10.1093/sysbio/syw044

Najle SR, Molina MC, Ruiz-Trillo I, Uttaro AD. 2016. Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals. Open Biology, 6(7). DOI:10.1098/rsob.160029

Nguyen DT, Gómez-Zurita J. 2016. Subtle ecological gradient in the tropics triggers high species-turnover in a local geographical scale. PLoS ONE, 11(6):1-26. DOI:10.1371/journal.pone.0156840

Ollé-Vila A, Duran-Nebreda S, Conde-Pueyo N, Montañez R, Solé R. 2016. A morphospace for synthetic organs and organoids: the possible and the actual. Integrative Biology (United Kingdom, 8(4):485-503. DOI:10.1039/c5ib00324e

O’Malley MA, Wideman JG, Ruiz-Trillo I. 2016. Losing Complexity: The Role of Simplification in Macroevolution. Trends in Ecology and Evolution, 31(8):608-621. DOI:10.1016/j.tree.2016.04.004

Pinho C, Faria R. 2016. Magadi tilapia ecological specialization: Filling the early gap in the speciation continuum. Molecular Ecology, 25(7):1420-1422. DOI:10.1111/mec.13598

Querejeta M, González-Esteban J, Gómez A, Fernández-González A, Aymerich P, Gosálbez J, Escoda L, Igea J, Castresana J. 2016. Genomic diversity and geographical structure of the Pyrenean desman. Conservation Genetics, 17(6):1333-1344. DOI:10.1007/s10592-016-0865-y

Rato C, Harris DJ, Carranza S, Machado L, Perera A. 2016. The taxonomy of the Tarentola mauritanica species complex (Gekkota: Phyllodactylidae): Bayesian species delimitation supports six candidate species. Molecular Phylogenetics and Evolution, 94(July):271-278. DOI:10.1016/j.ympev.2015.09.008

Rudoy A, Beutel RG, Ribera I. 2016. Evolution of the male genitalia in the genus Limnebius Leach, 1815 (Coleoptera, Hydraenidae). Zoological Journal of the Linnean Society, 178(1):97-127. DOI:10.1111/zoj.12402

Rudoy A, Ribera I. 2016. The macroevolution of size and complexity in insect male genitalia. PeerJ, 2016(4). DOI:10.7717/peerj.1882

Ruiz-Trillo I, Paps J. 2016. Acoelomorpha: earliest branching bilaterians or deuterostomes?. Organisms Diversity and Evolution, 16(2):391-399. DOI:10.1007/s13127-015-0239-1

Sanchez-Delgado M, Court F, Vidal E, Medrano J, Monteagudo-Sánchez A, Martin-Trujillo A, Tayama C, Iglesias-Platas I, Kondova I, Bontrop R, Poo-Llanillo ME, Marques-Bonet T, Nakabayashi K, Simón C, Monk D. 2016. Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting. PLoS Genetics, 12(11):1-23. DOI:10.1371/journal.pgen.1006427

Sánchez-Fernández D, Rizzo V, Cieslak A, Faille A, Fresneda J, Ribera I. 2016. Thermal niche estimators and the capability of poor dispersal species to cope with climate change. Scientific Reports, 6:1-8. DOI:10.1038/srep23381

Santos CG, Fernandez-Nicolas A, Belles X. 2016. Smads and insect hemimetabolan metamorphosis. Developmental Biology, 417(1):104-113. DOI:10.1016/j.ydbio.2016.07.006

Santpere G, Lopez-Valenzuela M, Petit-Marty N, Navarro A, Espinosa-Parrilla Y. 2016. Differences in molecular evolutionary rates among microRNAs in the human and chimpanzee genomes. BMC Genomics, 17(1):1-12. DOI:10.1186/s12864-016-2863-3

Sebé-Pedrós A, Ballaré C, Parra-Acero H, Chiva C, Tena JJ, Sabidó E, Gómez-Skarmeta JL, Di Croce L, Ruiz-Trillo I. 2016. The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity. Cell, 165(5):1224-1237. DOI:10.1016/j.cell.2016.03.034

Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E. 2016. High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation. Developmental Cell, 39(2):186-197. DOI:10.1016/j.devcel.2016.09.019

Šíchová J, Ohno M, Dincă V, Watanabe M, Sahara K, Marec F. 2016. Fissions, fusions, and translocations shaped the karyotype and multiple sex chromosome constitution of the northeast-Asian wood white butterfly, Leptidea amurensis. Biological Journal of the Linnean Society, 118(3):457-471. DOI:10.1111/bij.12756

Solé R. 2016. Synthetic transitions: Towards a new synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0438

Solé R. 2016. The major synthetic evolutionary transitions. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2016.0175

Solé R, Amor DR, Duran-Nebreda S, Conde-Pueyo N, Carbonell-Ballestero M, Montañez R. 2016. Synthetic collective intelligence. BioSystems, 148:47-61. DOI:10.1016/j.biosystems.2016.01.002

Solé R, Amor DR, Valverde S. 2016. On singularities and black holes in combination-driven models of technological innovation networks. PLoS ONE, 11(1):1-13. DOI:10.1371/journal.pone.0146180

Stange J, Dickhaus T, Navarro A, Schunk D. 2016. Multiplicity- and dependency-adjusted p-values for control of the family-wise error rate. Statistics and Probability Letters, 111:32-40. DOI:10.1016/j.spl.2016.01.005

Steels L, Szathmary E. 2016. Fluid Construction Grammar as a Biological System. Linguistics Vanguard 2(1): 20150022.

Steels L. 2016. Agent-based models for the emergence and evolution of grammar. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0447

Steels L, Loetzsch M, Spranger M. 2016. A boy named Sue. Belgian Journal of Linguistics, 30:147-169. DOI:10.1075/bjl.30.07ste

Stefanescu C, Soto DX, Talavera G, Vila R, Hobson KA. 2016. Long-distance autumn migration across the Sahara by painted lady butterflies: Exploiting resource pulses in the tropical savannah. Biology Letters, 12(10):6-9. DOI:10.1098/rsbl.2016.0561

Stefanini I, Dapporto L, Berń L, Polsinelli M, Turillazzi S, Cavalieri D. 2016. Social wasps are a saccharomyces mating nest. Proceedings of the National Academy of Sciences of the United States of America, 113(8):2247-2251. DOI:10.1073/pnas.1516453113

Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF; Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD. 2016. The time scale of recombination rate evolution in great apes. Molecular Biology and Evolution, 33(4):928-945. DOI:10.1093/molbev/msv331

Talavera G, Kaminski LA, Freitas AVL, Vila R. 2016. One-note samba: The biogeographical history of the relict Brazilian butterfly Elkalyce cogina. Journal of Biogeography, 43(4):727-737. DOI:10.1111/jbi.12671

Tamar K, Carranza S, Sindaco R, Moravec J, Trape JF, Meiri S. 2016. Out of Africa: Phylogeny and biogeography of the widespread genus Acanthodactylus (Reptilia: Lacertidae). Molecular Phylogenetics and Evolution, 103:6-18. DOI:10.1016/j.ympev.2016.07.003

Tamar K, Scholz S, Crochet PA, Geniez P, Meiri S, Schmitz A, Wilms T, Carranza S. 2016. Evolution around the Red Sea: Systematics and biogeography of the agamid genus Pseudotrapelus (Squamata: Agamidae) from North Africa and Arabia. Molecular Phylogenetics and Evolution, 97:55-68. DOI:10.1016/j.ympev.2015.12.021

Tamar K, Šmíd J, Göçmen B, Meiri S, Carranza S. 2016. An integrative systematic revision and biogeography of Rhynchocalamus snakes (Reptilia, Colubridae) with a description of a new species from Israel. PeerJ, 2016(12). DOI:10.7717/peerj.2769

Torruella-Loran I, Laayouni H, Dobon B, Gallego A, Balcells I, Garcia-Ramallo E, Espinosa-Parrilla Y. 2016. MicroRNA Genetic Variation: From Population Analysis to Functional Implications of Three Allele Variants Associated with Cancer. Human Mutation, 37(10):1060-1073. DOI:10.1002/humu.23045

Toussaint EFA, Beutel RG, Morinière J, Jia F, Xu S, Michat MC, Zhou X, Bilton DT, Ribera I, Hájek J, Balke M. 2016. Molecular phylogeny of the highly disjunct cliff water beetles from South Africa and China (Coleoptera: Aspidytidae). Zoological Journal of the Linnean Society, 176(3):537-546. DOI:10.1111/zoj.12332

Tuset VM, Otero-Ferrer JL, Gómez-Zurita J, Venerus LA, Stransky C, Imondi R, Orlov AM, Ye Z, Santschi L, Afanasiev PK, Zhuang L, Farré M, Love MS, Lombarte A. 2016. Otolith shape lends support to the sensory drive hypothesis in rockfishes. Journal of Evolutionary Biology, 29(10):2083-2097. DOI:10.1111/jeb.12932

Ureña E, Pirone L, Chafino S, Pérez C, Sutherland JD, Lang V, Rodriguez MS, Lopitz-Otsoa F, Blanco FJ, Barrio R, Martín D. 2016. Evolution of SUMO function and chain formation in insects. Molecular Biology and Evolution, 33(2):568-584. DOI:10.1093/molbev/msv242

Ureña E, Chafino S, Manjón C, Franch-Marro X, Martín D. 2016. The Occurrence of the Holometabolous Pupal Stage Requires the Interaction between E93, Krüppel-Homolog 1 and Broad-Complex. PLoS Genetics, 12(5):1-24. DOi:10.1371/journal.pgen.1006020

Urrios A, Macia J, Manzoni R, Conde N, Bonforti A, de Nadal E, Posas F, Solé R. 2016. A Synthetic Multicellular Memory Device. ACS Synthetic Biology, 5(8):862-873. DOI:10.1021/acssynbio.5b00252

Valles-Ibáñez G de, Hernandez-Rodriguez J, Prado-Martinez J, Luisi P, Marquès-Bonet T, Casals F. 2016. Genetic Load of Loss-of-Function Polymorphic Variants in Great Apes. Genome Biology and Evolution, 8(3):871-877. DOI:10.1093/gbe/evw040

Valverde S. 2016. Major transitions in information technology. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0450

Vasconcelos R, Montero-Mendieta S, Simó-Riudalbas M, Sindaco R, Santos X, Fasola M, Llorente G, Razzetti E, Carranza S. 2016. Unexpectedly high levels of cryptic diversity uncovered by a complete DNA barcoding of reptiles of the socotra archipelago. PLoS ONE, 11(3):1-19. DOI:10.1371/journal.pone.0149985

Vodă R, Dapporto L, Dincă V, Shreeve TG, Khaldi M, Barech G, Rebbas K, Sammut P, Scalercio S, Hebert PD, Vila R. 2016. Historical and contemporary factors generate unique butterfly communities on islands. Scientific Reports, 6(May):1-11. DOI:10.1038/srep28828

Willemsen A, Zwart MP, Higueras P, Sardanyés J, Elena SF. 2016. Predicting the stability of homologous gene duplications in a plant RNA virus. Genome Biology and Evolution, 8(9):3065-3082. DOI:10.1093/gbe/evw219

Ylla G, Fromm B, Piulachs MD, Belles X. 2016. The microRNA toolkit of insects. Scientific Reports, 6(November):1-13. DOI:10.1038/srep37736

2016 Books & Book chapters

Beutel RG, Ribera I. 2016. 7. Adephaga Schellenberg, 1806. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 77-79.

Beutel RG, Balke M, Ribera I. 2016. 7.7. Aspidytidae Ribera,Beutel, Balke and Vogler, 2002. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 141-149.

Bosch E, Casals F. Chapter 15: Next-generation sequencing for rare diseases in book Genome-Wide Association Studies: From Polymorphism to Personalized Medicine, edited by Dr. Krishnarao Appasani, Cambridge University Press. 2016. ISBN: 978-1-107-04276-6.

Casals F, Bosch E. Chapter 16: Next-generation sequencing for complex disorders. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine, edited by Dr. Krishnarao Appasani, Cambridge University Press. 2016. ISBN: 978-1-107-04276-6.

Hernando C, Ribera I. 2016. Family Limnichidae. In: Löbl, I. & Löbl, D. (eds) Catalogue of Palaearctic Coleoptera: Volume 3. Scarabaeoidea Scirtoidea Dascilloidea Buprestoidea - Byrrhoidea. Revised and Updated Edition. Brill, Leiden, pp. 607-610.

Hernando C, Ribera I. 2016. 19.5. Limnichidae Erichson, 1846. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 605-612.

Jackson B, Butlin R, Navarro A, Faria R. 2016. Chromosomal Rearrangements and Speciation. In: Encyclopedia of Evolutionary Biology. Ed: R. M. Kliman, Vol. 4, pp. 149–158. Academic Press (Oxford).

Lalueza-Fox, C. 2016. Genes, reyes e impostores. Editorial Calamo

Marigorta UM, Rodriguez JA, Navarro A. 2016. GWAS: a milestone in the road from genotypes to phenotypes. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine. Ed: K.Appasani. ISBN: 9781107042766. Cambridge University Press (Cambridge).

Marigorta UM, Rodriguez JA, Navarro A. 2016. GWAS replicability across time and space. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine. Ed: K. Appasani. ISBN: 9781107042766. Cambridge University Press (Cambridge).

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2016 Other publications

Bellés, X.; Perkovsky, E.E. 2016. New data on the genus Sucinoptius (Coleoptera, Ptinidae) from Rovno Amber. Vestnik Zoologii 50(1):17-22
Franzen, M.; Hawlitschek, O.; Aßmann, O.; Bayerl, M. 2016. Dice snake records (Natrix tessellata) from Bavaria with a molecular genetic study on their origin. Zeitschrift für Feldherpetologie 23(2):213-220
Hawlitschek, O.; Franzen, M.; Glaw, F. 2016. DNA barcoding of the amphibians and reptiles of Germany. Zeitschrift für Feldherpetologie 23(2):141-158

Maes, J.M. and Gómez-Zurita, J. 2016. Chrysomelidae (Coleoptera) de Nicaragua, Parte IV, Chrysomelinae. Revista Nicaragüense de Entomología 76(4): 3-94.

Maes, J.M.; Gómez-Zurita, J.; Riley, E.G.; Windsor, D.; Borowiec, L. and Chaboo, C.S. 2016. Chrysomelidae de Nicaragua, Parte VIII, Cassidinae sensu stricto (tortoise beetles). Revista Nicaragüense de Entomología 76(8): 3-189.

Maes, J.M.; Gómez-Zurita, J. and Staines, C.L. 2016. Chrysomelidae (Coleoptera) de Nicaragua, Parte IX, Cassidinae Hispinos. Revista Nicaragüense de Entomología 76(9): 3-201.

Monasterio, Y., de Freina, J.J., Antonietty, C.A. & Vila R. (2016). Descrita una nueva especie de mariposa nocturna. Quercus 361:45-47

Solé, R.V.; Montañez, R.; and Duran-Nebreda, S. 2016. Hacia una bioingeniería del planeta. Investigación y Ciencia 477

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