2020 ISI PUBLICATIONS

Aguadé-Gorgorió G, Solé R. 2020. Tumour neoantigen heterogeneity thresholds provide a time window for combination immunotherapy. Journal of the Royal Society Interface, 17(171). DOI:10.1098/rsif.2020.0736.

Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, Davie K, Misof B, González J, Aerts S, Lister R, Paps J, Rozas J, Sánchez-Gracia A, Irimia M, Maeso I, Casares F. 2020. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications, 11(1):1–11. DOI:10.1038/s41467-020-16284-8

Alsedà L, Vidiella B, Solé R, Lázaro JT, Sardanyés J. 2020. Dynamics in a time-discrete food-chain model with strong pressure on preys. Communications in Nonlinear Science and Numerical Simulation, 84:1–26. DOI:10.1016/j.cnsns.2020.105187

Arroyo AS, Iannes R, Bapteste E, Ruiz-Trillo I. 2020. Gene Similarity Networks Unveil a Potential Novel Unicellular Group Closely Related to Animals from the Tara Oceans Expedition. Genome Biology and Evolution, 12(9):1664-1678. DOI: 10.1093/gbe/evaa117.

Balmori-de la Puente A, Nores C, Román J, Fernández-González A, Aymerich P, Gosálbez J, Escoda L, Castresana J. 2020. Size increase without genetic divergence in the Eurasian water shrew Neomys fodiens. Scientific reports. 10(1):2298 doi: 10.1038/s41598-020-58289-9

Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, De Cahsan B, Larson G, O'Brien SJ, Eizirik E, Johnson WE, Koepfli KP, Wilting A, Fickel J, Dalén L, Lorenzen ED, Marques-Bonet T, Hansen AJ, Zhang G, Bhak J, Yamaguchi N, Gilbert MTP. 2020. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology, 30(24):5018-5025. DOI: 10.1016/j.cub.2020.09.051

Batlle-Masó L, Mensa-Vilaró A, Solís-Moruno M, Marquès-Bonet T, Arostegui JI, Casals F. 2020. Genetic diagnosis of autoinflammatory disease patients using clinical exome sequencing. European Journal of Medical Genetics, 63(5):103920. DOI: 10.1016/j.ejmg.2020.103920

Belles X. 2020. Krüppel homolog 1 and E93: The doorkeeper and the key to insect metamorphosisArchives of Insect Biochemistry and Physiology, 103(3):1-8. DOI:10.1002/arch.21609

Berdugo M, Delgado-Baquerizo M, Soliveres S, Hernández-Clemente R, Zhao Y, Gaitán JJ, Gross N, Saiz H, Maire V, Lehman A, Rillig MC, Solé RV, Maestre FT. 2020. Global ecosystem thresholds driven by aridity. Science, 367(6479):787–790. DOI: 10.1126/science.aay5958

Biagini SA, Ramos-Luis E, Comas D, Calafell F. 2020. The place of metropolitan France in the European genomic landscape. Human Genetics, 139(8):1091–1105. DOI: 10.1007/s00439-020-02158-y

Bianco E, Laval G, Font-Porterias N, García-Fernández C, Dobon B, Sabido-Vera R, Sukarova Stefanovska E, Kučinskas V, Makukh H, Pamjav H, Quintana-Murci L, Netea MG, Bertranpetit J, Calafell F, Comas D. 2020. Recent common origin, reduced population size, and marked admixture have shaped European roma genomes. Molecular Biology and Evolution, 37(11):3175–3187. DOI: 10.1093/molbev/msaa156

Blake LE, Roux J, Hernando-Herraez I, Banovich NE, Perez RG, Hsiao CJ, Eres I, Cuevas C, Marques-Bonet T, Gilad Y. 2020. A comparison of gene expression and DNA methylation patterns across tissues and species. Genome Research, 30(2):250–262. DOI: 10.1101/gr.254904.119

Bogaerts-Márquez M, Barrón MG, Fiston-Lavier AS, Vendrell-Mir P, Castanera R, Casacuberta JM, González J. 2020. T-lex3: An accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data. Bioinformatics, 36(4):1191-1197. DOI:10.1093/bioinformatics/btz727

Brasó-Vives M, Povolotskaya IS, Hartasánchez DA, Farré X, Fernandez-Callejo M, Raveendran M, Alan Harris R, Rosene DL, Lorente-Galdos B, Navarro A, Marques-Bonet T, Rogers J, Juan D. 2020. Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta). PLoS Genetics, 16(5). DOI: 10.1371/journal.pgen.1008742

Castro E Silva MA, Nunes K, Lemes RB, Mas-Sandoval À, Guerra Amorim CE, Krieger JE, Mill JG, Salzano FM, Bortolini MC, Pereira ADC, Comas D, Hünemeier T. 2020. Genomic insight into the origins and dispersal of the Brazilian coastal natives. Proceedings of the National Academy of Sciences of the United States of America, 117(5):2372–2377. DOI:10.1073/pnas.1909075117

Chicote JU, López-Sánchez M, Marquès-Bonet T, Callizo J, Pérez-Jurado LA, García-España A. 2020. Circular DNA intermediates in the generation of large human segmental duplications. BMC Genomics, 21(1):1–11. DOI: 10.1186/s12864-020-06998-w

Conde-Pueyo N, Vidiella B, Sardanyés J, Berdugo M, Maestre FT, Lorenzo V de, Solé R. 2020. Synthetic biology for terraformation lessons from mars, earth, and the microbiome. Life, 10(2):1–27. DOI: 10.3390/life10020014

Cruz J, Martín D, Franch-Marro X. 2020. Egfr Signaling Is a Major Regulator of Ecdysone Biosynthesis in the Drosophila Prothoracic Gland. Current Biology, 30(8):1547-1554. DOI: 10.3390/life10020014

da Silva A, Nobre H, Sampaio L, Nascimento B do, da Silva C, de Andrade Neto JB, Manresa Á, Pinazo A, Cavalcanti B, de Moraes MO, Ruiz-Trillo I, Antó M, Morán C, Pérez L. 2020. Antifungal and antiprotozoal green amino acid-based rhamnolipids: Mode of action, antibiofilm efficiency and selective activity against resistant Candida spp. strains and Acanthamoeba castellanii. Colloids and Surfaces B: Biointerfaces, 193(111148). DOI: 10.1016/j.colsurfb.2020.111148

de-Dios T, van Dorp L, Charlier P, Morfopoulou S, Lizano E, Bon C, Le Bitouzé C, Alvarez-Estape M, Marquès-Bonet T, Balloux F, Lalueza-Fox C. 2020. Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743–1793). Infection, Genetics and Evolution, 80(104209). DOI: 10.1016/j.meegid.2020.104209

Dehasque M, Ávila‐Arcos MC, Díez‐del‐Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas A, Marques‐Bonet T, Martin MD, Murray GGR, Papadopulos AST, Therkildsen NO, Wegmann D, Dalén L, Foote AD. 2020. Inference of natural selection from ancient DNA. Evolution Letters, 4(2):94–108. DOI: 10.1002/evl3.165

de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Garrett Vieira F, Zepeda Mendoza ML, Liu S, Martin MD, Sinding MS, Mak SST, Carøe C, Liu S, Guo C, Zheng J, Zazula G, Baryshnikov G, Eizirik E, Koepfli KP, Johnson WE, Antunes A, Sicheritz-Ponten T, Gopalakrishnan S, Larson G, Yang H, O'Brien SJ, Hansen AJ, Zhang G, Marques-Bonet T, Gilbert MTP.  2020. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America, 117(20): 10927–10934. DOI: 10.1073/pnas.1919423117

Dobon B, Ter Horst R, Laayouni H, Mondal M, Bianco E, Comas D, Ioana M, Bosch E, Bertranpetit J, Netea MG. 2020. The shaping of immunological responses through natural selection after the Roma Diaspora. Scientific Reports, 10(1):1–12. DOI: 10.1038/s41598-020-73182-1

Esteller-Cucala P, Maceda I, Børglum AD, Demontis D, Faraone SV, Cormand B, Lao O. 2020. Genomic analysis of the natural history of attention-deficit/hyperactivity disorder using Neanderthal and ancient Homo sapiens samples. Scientific Reports, 10(1):1–11. DOI: 10.1038/s41598-020-65322-4


volumedoi: 10.1038/s41598-020-65322-4. PMID: 32451437; PMCID: PMC7248073.

Esteve-Altava B. 2020. A node-based informed modularity strategy to identify organizational modules in anatomical networks. Biology Open, 9(10):1–8. DOI: 10.1242/bio.056176.

Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M Jr, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J. 2020. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods, 17(5):481-494. DOI: 10.1038/s41592-020-0796-x.

Farré X, Spataro N, Haziza F, Rambla J, Navarro A. 2020. Genome-phenome explorer (GePhEx): a tool for the visualization and interpretation of phenotypic relationships supported by genetic evidence. Bioinformatics, 36(3):890–896. DOI: 10.1093/bioinformatics/btz622

Fernandes DM, Mittnik A, Olalde I, Lazaridis I, Cheronet O, Rohland N, Mallick S, Bernardos R, Broomandkhoshbacht N, Carlsson J, Culleton BJ, Ferry M, Gamarra B, Lari M, Mah M, Michel M, Modi A, Novak M, Oppenheimer J, Sirak KA, Stewardson K, Mandl K, Schattke C, Özdoğan KT, Lucci M, Gasperetti G, Candilio F, Salis G, Vai S, Camarós E, Calò C, Catalano G, Cueto M, Forgia V, Lozano M, Marini E, Micheletti M, Miccichè RM, Palombo MR, Ramis D, Schimmenti V, Sureda P, Teira L, Teschler-Nicola M, Kennett DJ, Lalueza-Fox C, Patterson N, Sineo L, Coppa A, Caramelli D, Pinhasi R, Reich D. 2020. The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean. Nature Ecology & Evolution, 4(3): 334–345. DOI: 10.1038/s41559-020-1102-0.

Fernández D, Fernández R, Domínguez J, Díaz Cosín DJ, Novo M. 2020. Genome-informed integrative taxonomic description of three cryptic species in the earthworm genus Carpetania (Oligochaeta, Hormogastridae). Systematics and Biodiversity, 18(3):203–215. DOI: 10.1080/14772000.2020.1730474

Fernández R, Gabaldón T. 2020. Gene gain and loss across the metazoan tree of life. Nature Ecology & Evolution, 4(4):524–533. DOI: 10.1038/s41559-019-1069-x

Fernández R, Marcet-Houben M, Legeai F, Richard G, Robin S, Wucher V, Pegueroles C, Gabaldón T, Tagu D. 2020. Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum. Molecular Biology and Evolution, 37(9):2601–2615. DOI: 10.1093/molbev/msaa110

Ferrando-Bernal M, Morcillo-Suarez C, De-Dios T, Gelabert P, Civit S, Díaz-Carvajal A, Ollich-Castanyer I, Allentoft ME, Valverde S, Lalueza-Fox C. 2020. Mapping co-ancestry connections between the genome of a Medieval individual and modern Europeans. Scientific Reports, 10(1):6843. DOI: 10.1038/s41598-020-64007-2

Frandsen P, Fontsere C, Nielsen SV, Hanghøj K, Castejon-Fernandez N, Lizano E, Hughes D, Hernandez-Rodriguez J, Korneliussen TS, Carlsen F, Siegismund HR, Mailund T, Marques-Bonet T, Hvilsom C. 2020. Targeted conservation genetics of the endangered chimpanzee. Heredity, 125(1-2):15-27. DOI:10.1038/s41437-020-0313-0

García-Fernández C, Font-Porterias N, Kučinskas V, Sukarova-Stefanovska E, Pamjav H, Makukh H, Dobon B, Bertranpetit J, Netea MG, Calafell F, Comas D. 2020. Sex-biased patterns shaped the genetic history of Roma. Scientific Reports, 10(1):14464. DOI: 10.1038/s41598-020-71066-y

Gelabert P, Sandoval-Velasco M, Serres A, de Manuel M, Renom P, Margaryan A, Stiller J, de-Dios T, Fang Q, Feng S, Mañosa S, Pacheco G, Ferrando-Bernal M, Shi G, Hao F, Chen X, Petersen B, Olsen RA, Navarro A, Deng Y, Dalén L, Marquès-Bonet T, Zhang G, Antunes A, Gilbert MTP, Lalueza-Fox C. 2020. Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Current Biology, 30(1):108-114. DOI: 10.1016/j.cub.2019.10.066

Gil-Varea E, Fedetz M, Eixarch H, Spataro N, Villar LM, Urcelay E, Saiz A, Fernández Ó, Leyva L, Ramió-Torrentà L, Vandenbroeck K, Otaegui D, Castillo-Triviño T, Izquierdo G, Malhotra S, Bosch E, Navarro A, Alcina A, Montalban X, Matesanz F, Comabella M. 2020. A New Risk Variant for Multiple Sclerosis at 11q23.3 Locus Is Associated with Expansion of CXCR5+ Circulating Regulatory T Cells. Journal of Clinical Medicine, 9(3):625. DOI: 10.3390/jcm9030625

Gil-Varea E; Spataro N; Villar L.M.; Tejeda-Velarde A.; Midaglia L.; Matesanz F.; Malhotra S.; Eixarch H.; Patsopoulos N.; Fernández Ó.; Oliver-Martos B.; Saiz A. Llufriu S.; Ramió-Torrentà L.; Quintana E.; Izquierdo G.; Alcina A.; Bosch E.; Navarro A.; Montalban X.; Comabella M. 2020. Targeted resequencing reveals rare variants enrichment in multiple sclerosis susceptibility genes.. Human Mutation. doi: 10.1002/humu.24016

Gokhman D, Nissim-Rafinia M, Agranat-Tamir L, Housman G, García-Pérez R, Lizano E, Cheronet O, Mallick S, Nieves-Colón MA, Li H, Alpaslan-Roodenberg S, Novak M, Gu H, Osinski JM, Ferrando-Bernal M, Gelabert P, Lipende I, Mjungu D, Kondova I, Bontrop R, Kullmer O, Weber G, Shahar T, Dvir-Ginzberg M, Faerman M, Quillen EE, Meissner A, Lahav Y, Kandel L, Liebergall M, Prada ME, Vidal JM, Gronostajski RM, Stone AC, Yakir B, Lalueza-Fox C, Pinhasi R, Reich D, Marques-Bonet T, Meshorer E, Carmel L. 2020. Differential DNA methylation of vocal and facial anatomy genes in modern humans. Nature Communications, 11(1):1189. DOI: 10.1038/s41467-020-15020-6.

Gómez-Zurita J, Platania L, Cardoso A. 2020. A new species of the genus Tricholapita nom. nov. And stat. nov. (Coleoptera: Chrysomelidae, Eumolpinae) from New Caledonia. Zootaxa, 4858(1):85-94. DOI:10.11646/zootaxa.4858.1.5

González JR, Ruiz-Arenas C, Cáceres A, Morán I, López-Sánchez M, Alonso L, Tolosana I, Guindo-Martínez M, Mercader JM, Esko T, Torrents D, González J, Pérez-Jurado LA. 2020. Polymorphic Inversions Underlie the Shared Genetic Susceptibility of Obesity-Related Diseases. The American Journal of Human Genetics, 106(6):846–858. DOI: 10.1016/j.ajhg.2020.04.017

Greener MS, Verbrugghe E, Kelly M, Blooi M, Beukema W, Canessa S, Carranza S, Croubels S, De Troyer N, Fernandez-Giberteau D, Goethals P, Lens L, Li Z, Stegen G, Strubbe D, van Leeuwenberg R, Van Praet S, Vila-Escale M, Vervaeke M, Pasmans F, Martel A. 2020. Presence of low virulence chytrid fungi could protect European amphibians from more deadly strains. Nature Communications, 11(1):5393. DOI: 10.1038/s41467-020-19241-7

Harding T, Milot E, Moreau C, Lefebvre JF, Bournival JS, Vézina H, Laprise C, Lalueza-Fox C, Anglada R, Loewen B, Casals F, Ribot I, Labuda D. Historical human remains identification through maternal and paternal genetic signatures in a founder population with extensive genealogical record. 2020. Historical human remains identification through maternal and paternal genetic signatures in a founder population with extensive genealogical record. American Journal of Physical Anthropology, 171(4):645–658. DOI: 10.1002/ajpa.24024

Heredia-Genestar JM, Marquès-Bonet T, Juan D, Navarro A. 2020. Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations. Nature Communications, 11(1):2512. DOI: 10.1038/s41467-020-16296-4.

Hinojosa JC, Koubínová D, Dincă V, Hernández‐Roldán J, Munguira ML, García‐Barros E, Vila M, Alvarez N, Mutanen M, Vila R. 2020. Rapid colour shift by reproductive character displacement in Cupido butterflies. Molecular Ecology, 29(24):4942–4955. DOI: 10.1111/mec.15682.

Howard RJ, Puttick MN, Edgecombe GD, Lozano-Fernandez J. 2020. Arachnid monophyly: Morphological, palaeontological and molecular support for a single terrestrialization within Chelicerata. Arthropod Structure & Development, 59(100997). DOI: 10.1016/j.asd.2020.100997.

Kaminski LA, Volkmann L, Callaghan CJ, DeVries PJ, Vila R. 2020. The first known riodinid ‘cuckoo’ butterfly reveals deep-time convergence and parallelism in ant social parasites. Zoological Journal of the Linnean Society, 1-20. DOI:10.1093/zoolinnean/zlaa150

Kamsoi O, Belles X. 2020. E93-depleted adult insects preserve the prothoracic gland and molt again. Development, 147(22). DOI: 10.1242/dev.190066.

Kapun M, Barrón MG, Staubach F, Obbard DJ, Wiberg RAW, Vieira J, Goubert C, Rota-Stabelli O, Kankare M, Bogaerts-Márquez M, Haudry A, Waidele L, Kozeretska I, Pasyukova EG, Loeschcke V, Pascual M, Vieira CP, Serga S, Montchamp-Moreau C, Abbott J, Gibert P, Porcelli D, Posnien N, Sánchez-Gracia A, Grath S, Sucena É, Bergland AO, Guerreiro MPG, Onder BS, Argyridou E, Guio L, Schou MF, Deplancke B, Vieira C, Ritchie MG, Zwaan BJ, Tauber E, Orengo DJ, Puerma E, Aguadé M, Schmidt P, Parsch J, Betancourt AJ, Flatt T, González J. 2020. Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses. Molecular Biology and Evolution, 37(9):2661–2678. DOI: 10.1093/molbev/msaa120

Khan N, de Manuel M, Peyregne S, Do R, Prufer K, Marques-Bonet T, Varki N, Gagneux P, Varki A. 2020. Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins. Genome Biology and Evolution, 12(7):1040–1050. DOI: 10.1093/gbe/evaa125

Kuderna LF, Esteller-Cucala P, Marques-Bonet T. 2020. Branching out: what omics can tell us about primate evolution. Current Opinion in Genetics & Development, 62:65–71. DOI: 10.1016/j.gde.2020.06.006

Kuderna LFK, Solís-Moruno M, Batlle-Masó L, Julià E, Lizano E, Anglada R, Ramírez E, Bote A, Tormo M, Marquès-Bonet T, Fornas Ò, Casals F.  2020. Flow Sorting Enrichment and Nanopore Sequencing of Chromosome 1 From a Chinese Individual. Frontiers in Genetics, 10(1315). DOI: 10.3389/fgene.2019.01315

Lee HW, Esteve-Altava B, Abzhanov A. 2020. Evolutionary and ontogenetic changes of the anatomical organization and modularity in the skull of archosaurs. Scientific Reports, 10(1):16138. DOI: 10.1038/s41598-020-73083-3

Lipson M, Ribot I, Mallick S, Rohland N, Olalde I, Adamski N, Broomandkhoshbacht N, Lawson AM, López S, Oppenheimer J, Stewardson K, Asombang RN, Bocherens H, Bradman N, Culleton BJ, Cornelissen E, Crevecoeur I, de Maret P, Fomine FLM, Lavachery P, Mindzie CM, Orban R, Sawchuk E, Semal P, Thomas MG, Van Neer W, Veeramah KR, Kennett DJ, Patterson N, Hellenthal G, Lalueza-Fox C, MacEachern S, Prendergast ME, Reich D. 2020. Ancient West African foragers in the context of African population history. Nature, 577(7792):665–670. DOI: 10.1038/s41586-020-1929-1.

López Seguí F, Ander Egg Aguilar R, de Maeztu G, García-Altés A, García Cuyàs F, Walsh S, Sagarra Castro M, Vidal-Alaball J. 2020. Teleconsultations between Patients and Healthcare Professionals in Primary Care in Catalonia: The Evaluation of Text Classification Algorithms Using Supervised Machine Learning. International Journal of Environmental Research and Public Health, 17(3), 1093. DOI: 10.3390/ijerph17031093

Lozano-Fernandez J, Tanner AR, Puttick MN, Vinther J, Edgecombe GD, Pisani D. 2020. A Cambrian–Ordovician Terrestrialization of Arachnids. Frontiers in Genetics, 11(182). DOI: 10.3389/fgene.2020.00182

Lukhtanov VA, Dincă V, Friberg M, Vila R, Wiklund C. 2020. Incomplete Sterility of Chromosomal Hybrids: Implications for Karyotype Evolution and Homoploid Hybrid Speciation. Frontiers in Genetics, 11: 583827. DOI: 10.3389/fgene.2020.583827

Lu Y, Ocaña-Pallarès E, López-Escardó D, Dennis SR, Monaghan MT, Ruiz-Trillo I, Spaak P, Wolinska J.  2020. Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes. Molecular Phylogenetics and Evolution, 151(106891). DOI: 10.1016/j.ympev.2020.106891

Marchán DF, Novo M, Sánchez N, Domínguez J, Díaz Cosín DJ, Fernández R. 2020. Local adaptation fuels cryptic speciation in terrestrial annelids. Molecular Phylogenetics and Evolution, 146:106767. DOI:10.1016/j.ympev.2020.106767

Mohamed M, Dang NTM, Ogyama Y, Burlet N, Mugat B, Boulesteix M, Mérel V, Veber P, Salces-Ortiz J, Severac D, Pélisson A, Vieira C, Sabot F, Fablet M, Chambeyron S. 2020. A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore. Cells, 9(8),1776. DOI: 10.3390/cells9081776

Mori E, Malfatti L, Le Louarn M, Hernández–Brito D, ten Cate B, Ricci M, Menchetti M. 2020. Some like it alien”: predation on invasive ring–necked parakeets by the long–eared owl in an urban area. Animal Biodiversity and Conservation, 43(1):151–158. DOI 10.32800/abc.2020.43.0151

Nägele K, Posth C, Iraeta Orbegozo M, Chinique de Armas Y, Hernández Godoy ST, González Herrera UM, Nieves-Colón MA, Sandoval-Velasco M, Mylopotamitaki D, Radzeviciute R, Laffoon J, Pestle WJ, Ramos-Madrigal J, Lamnidis TC, Schaffer WC, Carr RS, Day JS, Arredondo Antúnez C, Rangel Rivero A, Martínez-Fuentes AJ, Crespo-Torres E, Roksandic I, Stone AC, Lalueza-Fox C, Hoogland M, Roksandic M, Hofman CL, Krause J, Schroeder H. 2020. Genomic insights into the early peopling of the Caribbean. Science, 369(6502):456-460. DOI:10.1126/science.aba8697

Najle SR, Hernández J, Ocaña-Pallarès E, García Siburu N, Nusblat AD, Nudel CB, Slamovits CH, Uttaro AD. 2020. Genome-wide Transcriptional Analysis of Tetrahymena thermophila Response to Exogenous Cholesterol. Journal of Eukaryotic Microbiology, 67(2):209-222. DOI:10.1111/jeu.12774

Nakatsuka N, Luisi P, Motti JMB, Salemme M, Santiago F, D'Angelo Del Campo MD, Vecchi RJ, Espinosa-Parrilla Y, Prieto A, Adamski N, Lawson AM, Harper TK, Culleton BJ, Kennett DJ, Lalueza-Fox C, Mallick S, Rohland N, Guichón RA, Cabana GS, Nores R, Reich D. 2020. Ancient genomes in South Patagonia reveal population movements associated with technological shifts and geography. Nature Communications, 11(1):3868. DOI: 10.1038/s41467-020-17656-w.

Núñez AI, Esteve-Codina A, Gómez-Garrido J, Brustolin M, Talavera S, Berdugo M, Dabad M, Alioto T, Bensaid A, Busquets N.2020. Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure. PLOS Neglected Tropical Diseases, 14(12):e0008870. DOI: 10.1371/journal.pntd.0008870

Nye J, Mondal M, Bertranpetit J, Laayouni H. 2020. A fully integrated machine learning scan of selection in the chimpanzee genome. NAR Genomics and Bioinformatics, 2(3). DOI:10.1093/nargab/lqaa061

Ocaña-Pallarès E, Vergara Z, Desvoyes B, Tejada-Jimenez M, Romero-Jurado A, Galván A, Fernández E, Ruiz-Trillo I, Gutierrez C. 2020. Origin Recognition Complex (ORC) Evolution Is Influenced by Global Gene Duplication/Loss Patterns in Eukaryotic Genomes. Genome Biology and Evolution, 12(2):3878-3889. DOI:10.1093/gbe/evaa011

Olalde I, Posth C. 2020. Latest trends in archaeogenetic research of west Eurasians. Current Opinion in Genetics and Development, 62:36-43. DOI: 10.1016/j.gde.2020.05.021

Ollé-Vila A, Seoane LF, Solé R. 2020. Ageing, computation and the evolution of neural regeneration processes. Journal of The Royal Society Interface, 17(168). DOI:10.1098/rsif.2020.0181

Parra-Acero H, Harcet M, Sánchez-Pons N, Casacuberta E, Brown NH, Dudin O, Ruiz-Trillo I. 2020. Integrin-Mediated Adhesion in the Unicellular Holozoan Capsaspora owczarzaki. Current Biology, 30(21):4270-4275. DOI: 10.1016/j.cub.2020.08.015

Pérez-Posada A, Dudin O, Ocaña-Pallarès E, Ruiz-Trillo I, Ondracka A. 2020. Cell cycle transcriptomics of Capsaspora provides insights into the evolution of cyclin-CDK machinery. PLOS Genetics, 16(3). DOI: 10.1371/journal.pgen.1008584

Peroni S, Sorosina M, Malhotra S, Clarelli F, Osiceanu AM, Ferrè L, Roostaei T, Rio J, Midaglia L, Villar LM, Álvarez-Cermeño JC, Guaschino C, Radaelli M, Citterio L, Lechner-Scott J, Spataro N, Navarro A, Martinelli V, Montalban X, Weiner HL, de Jager P, Comi G, Esposito F, Comabella M, Martinelli-Boneschi F. 2020. A pharmacogenetic study implicates NINJ2 in the response to Interferon-β in multiple sclerosis. Multiple Sclerosis Journal, 26(9):1074-1082. DOI:10.1177/1352458519851428

Petr M, Hajdinjak M, Fu Q, Essel E, Rougier H, Crevecoeur I, Semal P, Golovanova LV, Doronichev VB, Lalueza-Fox C, de la Rasilla M, Rosas A, Shunkov MV, Kozlikin MB, Derevianko AP, Vernot B, Meyer M, Kelso J. 2020. The evolutionary history of Neanderthal and Denisovan Y chromosomes. Science, 369(6511):1653-1656. DOI:10.1126/science.abb6460

Platania L, Menchetti M, Dinca V, Corbella C, Kay-Lavelle I, Vila R, Wiemers M, Schweiger O, Dapporto L. 2020. Assigning occurrence data to cryptic taxa improves climatic niche assessments: Biodecrypt, a new tool tested on European butterflies. Global Ecology and Biogeography, 29(10):1852-1865. DOI:10.1111/geb.13154 

Racimo F, Sikora M, Vander Linden M, Schroeder H, Lalueza-Fox C. 2020. Beyond broad strokes: sociocultural insights from the study of ancient genomes. Nature Reviews Genetics, 21(6):355-366. DOI:10.1038/s41576-020-0218-z

Ramos S, Chelemen F, Pagone V, Elshaer N, Irles P, Piulachs MD. 2020. Eyes absent in the cockroach panoistic ovaries regulates proliferation and differentiation through ecdysone signalling. Insect Biochemistry and Molecular Biology, 123(103407). DOI: 10.1016/j.ibmb.2020.103407

Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, Chertemps T, Couture C, Delière L, Douglas AE, Dufault-Thompson K, Escuer P, Feng H, Forneck A, Gabaldón T, Guigó R, Hilliou F, Hinojosa-Alvarez S, Hsiao YM, Hudaverdian S, Jacquin-Joly E, James EB, Johnston S, Joubard B, Le Goff G, Le Trionnaire G, Librado P, Liu S, Lombaert E, Lu HL, Maïbèche M, Makni M, Marcet-Houben M, Martínez-Torres D, Meslin C, Montagné N, Moran NA, Papura D, Parisot N, Rahbé Y, Lopes MR, Ripoll-Cladellas A, Robin S, Roques C, Roux P, Rozas J, Sánchez-Gracia A, Sánchez-Herrero JF, Santesmasses D, Scatoni I, Serre RF, Tang M, Tian W, Umina PA, van Munster M, Vincent-Monégat C, Wemmer J, Wilson ACC, Zhang Y, Zhao C, Zhao J, Zhao S, Zhou X, Delmotte F, Tagu D. 2020. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biology, 18(1):90. DOI:10.1186/s12915-020-00820-5

Ruiz-Arenas C, Cáceres A, López M, Pelegrí-Sisó D, González J, González JR.2020. Identifying chromosomal subpopulations based on their recombination histories advances the study of the genetic basis of phenotypic traits. Genome Research, 30(12):1802-1814. DOI:10.1101/gr.258301.119

Ruiz-Trillo I, de Mendoza A. 2020. Towards understanding the origin of animal development. Development, 147(23):1-7. DOI:10.1242/dev.192575

Salces-Ortiz J, Vargas-Chavez C, Guio L, Rech GE, González J. 2020. Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1795):20190341. DOI:10.1098/rstb.2019.0341

Schär S, Menchetti M, Schifani E, Hinojosa JC, Platania L, Dapporto L, Vila R. 2020. Integrative biodiversity inventory of ants from a Sicilian archipelago reveals high diversity on young volcanic islands (Hymenoptera: Formicidae). Organisms Diversity & Evolution, 20(3):405-416. DOI:10.1007/s13127-020-00442-3

Sánchez-Valle J, Tejero H, Fernández JM, Juan D, Urda-García B, Capella-Gutiérrez S, Al-Shahrour F, Tabarés-Seisdedos R, Baudot A, Pancaldi V, Valencia A. 2020. Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships. Nature Communications, 11(2854). DOI:10.1038/s41467-020-16540-x

Souza D de S, Marinoni L, Monné ML, Gómez-Zurita J. 2020. Molecular phylogenetic assessment of the tribal classification of Lamiinae (Coleoptera: Cerambycidae). Molecular Phylogenetics and Evolution,145(106736). DOI: 10.1016/j.ympev.2020.106736

Santpere G, Telford M, Andrés-Benito P, Navarro A, Ferrer I. 2020. The Presence of Human Herpesvirus 6 in the Brain in Health and Disease. Biomolecules, 10(11):1520. DOI: 10.3390/biom10111520

Scalercio S, Cini A, Menchetti M, Vodă R, Bonelli S, Bordoni A, Casacci LP, Dincă V, Balletto E, Vila R, Dapporto L. 2020. How long is 3 km for a butterfly? Ecological constraints and functional traits explain high mitochondrial genetic diversity between Sicily and the Italian Peninsula. Journal of Animal Ecology, 89(9):2013-2026. DOI: 10.1111/1365-2656.13196

Seoane LF, Solé R. 2020. Criticality in Pareto Optimal Grammars? Entropy, 22(2):165. DOI: 10.3390/e22020165.

Sigona C, Bardi A, Modeo L, Mori G, Potekhin A, Verni F, Munz G, Petroni G. 2020. Role of bacterivorous organisms on fungal-based systems for natural tannin degradation. Heliyon, 6(4). DOI:10.1016/j.heliyon.2020.e03604

Sjögren KG, Olalde I, Carver S, Allentoft ME, Knowles T, Kroonen G, Pike AWG, Schröter P, Brown KA, Brown KR, Harrison RJ, Bertemes F, Reich D, Kristiansen K, Heyd V. 2020. Kinship and social organization in Copper Age Europe. A cross-disciplinary analysis of archaeology, DNA, isotopes, and anthropology from two Bell Beaker cemeteries. PLOS ONE, 15(11). DOI:10.1371/journal.pone.0241278

Slavenko A, Tamar K, Tallowin OJS, Allison A, Kraus F, Carranza S, Meiri S. 2020. Cryptic diversity and non-adaptive radiation of montane New Guinea skinks (Papuascincus; Scincidae). Molecular Phylogenetics and Evolution, 146(106749):106749. DOI: 10.1016/j.ympev.2020.106749

Solé R. 2020. Using information theory to decode network coevolution. Science, 368(6497):1315-1316. DOI:10.1126/science.abc6344

Solé R, Valverde S. 2020. Evolving complexity: how tinkering shapes cells, software and ecological networks. Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1796). DOI:10.1098/rstb.2019.0325

Solé R, Valverde S. 2020. Evolving complexity: how tinkering shapes cells, software and ecological networks. The Royal Society.  doi: 10.1098/rstb.2019.0325

Sotelo G, Duvetorp M, Costa D, Panova M, Johannesson K, Faria R. 2020. Phylogeographic history of flat periwinkles, Littorina fabalis and L. obtusata. BMC Evolutionary Biology, 20(23). DOI:10.1186/s12862-019-1561-6

volume. 

Sinding MS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, Nikolskiy PA, Kasparov AK, Ivanova VV, Willerslev E, Skoglund P, Fredholm M, Wennerberg SE, Heide-Jørgensen MP, Dietz R, Sonne C, Meldgaard M, Dalén L, Larson G, Petersen B, Sicheritz-Pontén T, Bachmann L, Wiig Ø, Marques-Bonet T, Hansen AJ, Gilbert MTP. 2020. Arctic-adapted dogs emerged at the Pleistocene–Holocene transition. Science, 368(6498):1495-1499. DOI:10.1126/science.aaz8599

Talavera G, Kaliszewska ZA, Heath A, Pierce NE.2020. Recent diversification of Chrysoritis butterflies in the South African Cape (Lepidoptera: Lycaenidae). Molecular Phylogenetics and Evolution, 148(106817). DOI:10.1016/j.ympev.2020.106817

Telford M, Hughes DA, Juan D, Stoneking M, Navarro A, Santpere G. 2020. Expanding the geographic characterisation of Epstein–Barr virus variation through gene-based approaches. Microorganisms, 8(11):1-27. DOI:10.3390/microorganisms8111686

Valiente-Pallejà A, Torrell H, Alonso Y, Vilella E, Muntané G, Martorell L. 2020. Increased blood lactate levels during exercise and mitochondrial DNA alterations converge on mitochondrial dysfunction in schizophrenia. Schizophrenia Research, 220:61-68. DOI:10.1016/j.schres.2020.03.070

Valverde S, Vidiella B, Montañez R, Fraile A, Sacristán S, García-Arenal F. 2020. Coexistence of nestedness and modularity in host–pathogen infection networks. Nature Ecology and Evolution,4(4):568-577. DOI:10.1038/s41559-020-1130-9

van Dorp L, Gelabert P, Rieux A, de Manuel M, de-Dios T, Gopalakrishnan S, Carøe C, Sandoval-Velasco M, Fregel R, Olalde I, Escosa R, Aranda C, Huijben S, Mueller I, Marquès-Bonet T, Balloux F, Gilbert MTP, Lalueza-Fox C. 2020. Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain. Molecular Biology and Evolution, 37(3):773–785. DOI: 10.1093/molbev/msz264

Vasconcelos R, Pujol-Buxó E, Llorente GA, Saeed A, Carranza S. 2020. Micro-hotspots for conservation: An umbrella tree species for the unique socotran reptile fauna. Forests, 11(3):1-10. DOI:10.3390/f11030353

Vasconcelos R, Köhler G, Geniez P, Crochet PA. 2020. A new endemic species of Hemidactylus (Squamata: Gekkonidae) from São Nicolau Island, Cabo Verde. Zootaxa, 4878(3):501-522. DOI:10.11646/zootaxa.4878.3.4

Ventós-Alfonso A, Ylla G, Montañes JC, Belles X. 2020. DNMT1 Promotes Genome Methylation and Early Embryo Development in Cockroaches. iScience, 23(12). DOI:10.1016/j.isci.2020.101778

Vidiella B, Sardanyés J, Solé R V. 2020. Synthetic soil crusts against green-desert transitions: A spatial model: Synthetic ecosystems’ terraformation. Royal Society Open Science,7(8). DOI:10.1098/rsos.200161rsos200161

Villastrigo A, Arribas P, Ribera I. 2020. Irreversible habitat specialization does not constrain diversification in hypersaline water beetles. Molecular Ecology, 29(19):3637-3648. DOI:10.1111/mec.15593

Vizueta J, Escuer P, Frías-López C, Guirao-Rico S, Hering L, Mayer G, Rozas J, Sánchez-Gracia A. 2020. Evolutionary history of major chemosensory gene families across panarthropoda. Molecular Biology and Evolution, 37(12):3601-3615. DOI:10.1093/molbev/msaa197

Walsh S, Pagani L, Xue Y, Laayouni H, Tyler-Smith C, Bertranpetit J. 2020. Positive selection in admixed populations from Ethiopia. BMC Genetics, 21(Suppl 1):1-17. DOI:10.1186/s12863-020-00908-5

Walsh S, Izquierdo-Serra M, Acosta S, Edo A, Lloret M, Moret R, Bosch E, Oliva B, Bertranpetit J, Fernández-Fernández JM. 2020. Adaptive selection drives TRPP3 loss-of-function in an Ethiopian population. Scientific Reports, 10(1):1-16. DOI:10.1038/s41598-020-78081-z

Welker F, Ramos-Madrigal J, Gutenbrunner P, Mackie M, Tiwary S, Rakownikow Jersie-Christensen R, Chiva C, Dickinson MR, Kuhlwilm M, de Manuel M, Gelabert P, Martinón-Torres M, Margvelashvili A, Arsuaga JL, Carbonell E, Marques-Bonet T, Penkman K, Sabidó E, Cox J, Olsen JV, Lordkipanidze D, Racimo F, Lalueza-Fox C, Bermúdez de Castro JM, Willerslev E, Cappellini E. 2020. The dental proteome of Homo antecessor. Nature, 580(7802):235-238. DOI:10.1038/s41586-020-2153-8

Yoshido A, Šíchová J, Pospíšilová K, Nguyen P, Voleníková A, Šafář J, Provazník J, Vila R, Marec F. 2020. Evolution of multiple sex-chromosomes associated with dynamic genome reshuffling in Leptidea wood-white butterflies. Heredity, 125(3):138-154. DOI:10.1038/s41437-020-0325-9

Platania L, Vodă R, Dincă V, Talavera G, Vila R, Dapporto L. 2020. Integrative analyses on Western Palearctic Lasiommata reveal a mosaic of nascent butterfly species. Journal of Zoological Systematics and Evolutionary Research, 58(4):809-822. DOI:10.1111/jzs.12356