2023 Publications
Aguadé‐Gorgorió G, Costa J, Solé R. 2023. An oncospace for human cancers. BioEssays, 45(5). DOI:10.1002/bies.202200215
Alvarez-Estape M, Pawar H, Fontsere C, Trujillo AE, Gunson JL, Bergl RA, Bermejo M, Linder JM, McFarland K, Oates JF, Sunderland-Groves JL, Orkin J, Higham JP, Viaud-Martinez KA, Lizano E, Marques-Bonet T. 2023. Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs. Genes, 14(3):743. DOI:10.3390/genes14030743
Azpiazu C, Medina P, Sgolastra F, Moreno-Delafuente A, Viñuela E. 2023. Pesticide residues in nectar and pollen of melon crops: Risk to pollinators and effects of a specific pesticide mixture on Bombus terrestris (Hymenoptera: Apidae) micro-colonies. Environmental Pollution, 326(March):121451. DOI:10.1016/j.envpol.2023.121451
Benítez-Álvarez L, Leria L, Fernández R, Mateos E, El Ouanighi Y, Bennas N, El Alami M, Yacoubi-Khebiza M, Ayt Ougougdal H, Riutort M. 2023. Phylotranscriptomics interrogation uncovers a complex evolutionary history for the planarian genus Dugesia (Platyhelminthes, Tricladida) in the Western Mediterranean. Molecular Phylogenetics and Evolution, 178:107649. DOI:10.1016/j.ympev.2022.107649
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, Chow W, Tracey A, Sims Y, Pelan S, Wood J, Yetsko K, Perrault JR, Stewart K, Benson SR, Levy Y, Todd EV, Shaffer HB, Scott P, Henen BT, Murphy RW, Mohr DW, Scott AF, Duffy DJ, Gemmell NJ, Suh A, Winkler S, Thibaud-Nissen F, Nery MF, Marques-Bonet T, Antunes A, Tikochinski Y, Dutton PH, Fedrigo O, Myers EW, Jarvis ED, Mazzoni CJ, Komoroske LM. 2023. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences, 120(7):2017. DOI:10.1073/pnas.2201076120
Caro-Consuegra R, Lucas-Sánchez M, Comas D, Bosch E. 2023. Identifying signatures of positive selection in human populations from North Africa. Scientific Reports, 13(1):8166. DOI:10.1038/s41598-023-35312-3
Chafino S, Giannios P, Casanova J, Martin D, Franch-Marro X. 2023. Antagonistic role of the BTB-zinc finger transcription factors chinmo and broad-complex in the juvenile/pupal transition and in growth control. eLife, 12. DOI:10.7554/eLife.84648
Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, Goodman DB, Goodman L, Keough KC, Kirilenko B, Kowalczyk A, Lawless C, Lind AL, Meadows JRS, Moreira LR, Redlich RW, Ryan L, Swofford R, Valenzuela A, Wagner F, Wallerman O, Brown AR, Damas J, Fan K, Gatesy J, Grimshaw J, Johnson J, Kozyrev SV, Lawler AJ, Marinescu VD, Morrill KM, Osmanski A, Paulat NS, Phan BN, Reilly SK, Schäffer DE, Steiner C, Supple MA, Wilder AP, Wirthlin ME, Xue JR; Zoonomia Consortium§; Birren BW, Gazal S, Hubley RM, Koepfli KP, Marques-Bonet T, Meyer WK, Nweeia M, Sabeti PC, Shapiro B, Smit AFA, Springer MS, Teeling EC, Weng Z, Hiller M, Levesque DL, Lewin HA, Murphy WJ, Navarro A, Paten B, Pollard KS, Ray DA, Ruf I, Ryder OA, Pfenning AR, Lindblad-Toh K, Karlsson EK, Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, Breit AM, Christmas MJ, Clawson H, Damas J, Di Palma F, Diekhans M, Dong MX, Eizirik E, Fan K, Fanter C, Foley NM, Forsberg-Nilsson K, Garcia CJ, Gatesy J, Gazal S, Genereux DP, Goodman L, Grimshaw J, Halsey MK, Harris AJ, Hickey G, Hiller M, Hindle AG, Hubley RM, Hughes GM, Johnson J, Juan D, Kaplow IM, Karlsson EK, Keough KC, Kirilenko B, Koepfli KP, Korstian JM, Kowalczyk A, Kozyrev SV, Lawler AJ, Lawless C, Lehmann T, Levesque DL, Lewin HA, Li X, Lind A, Lindblad-Toh K, Mackay-Smith A, Marinescu VD, Marques-Bonet T, Mason VC, Meadows JRS, Meyer WK, Moore JE, Moreira LR, Moreno-Santillan DD, Morrill KM, Muntané G, Murphy WJ, Navarro A, Nweeia M, Ortmann S, Osmanski A, Paten B, Paulat NS, Pfenning AR, Phan BN, Pollard KS, Pratt HE, Ray DA, Reilly SK, Rosen JR, Ruf I, Ryan L, Ryder OA, Sabeti PC, Schäffer DE, Serres A, Shapiro B, Smit AFA, Springer M, Srinivasan C, Steiner C, Storer JM, Sullivan KAM, Sullivan PF, Sundström E, Supple MA, Swofford R, Talbot JE, Teeling E, Turner-Maier J, Valenzuela A, Wagner F, Wallerman O, Wang C, Wang J, Weng Z, Wilder AP, Wirthlin ME, Xue JR, Zhang X. 2023. Evolutionary constraint and innovation across hundreds of placental mammals. Science, 380(6643). DOI:10.1126/science.abn3943
Coronado-Zamora M, Salces-Ortiz J, González J. 2023. DrosOmics: A Browser to Explore -omics Variation Across High-Quality Reference Genomes From Natural Populations of Drosophila melanogaster. Molecular Biology and Evolution, 40(4). DOI:10.1093/molbev/msad075
Couto-Silva CM, Nunes K, Venturini G, Araújo Castro E Silva M, Pereira LV, Comas D, Pereira A, Hünemeier T. 2023. Indigenous people from Amazon show genetic signatures of pathogen-driven selection. Science Advances, 9(10):1-10. DOI:10.1126/sciadv.abo0234
Cruz J, Maestro O, Franch-Marro X, Martín D. 2023. Nuclear receptors EcR-A/RXR and HR3 control early embryogenesis in the short-germ hemimetabolous insect Blattella germanica. iScience, 26(4):106548. DOI:10.1016/j.isci.2023.106548
Davies SW, Gamache MH, Howe-Kerr LI, Kriefall NG, Baker AC, Banaszak AT, Bay LK, Bellantuono AJ, Bhattacharya D, Chan CX, Claar DC, Coffroth MA, Cunning R, Davy SK, Del Campo J, Díaz-Almeyda EM, Frommlet JC, Fuess LE, González-Pech RA, Goulet TL, Hoadley KD, Howells EJ, Hume BCC, Kemp DW, Kenkel CD, Kitchen SA, LaJeunesse TC, Lin S, McIlroy SE, McMinds R, Nitschke MR, Oakley CA, Peixoto RS, Prada C, Putnam HM, Quigley K, Reich HG, Reimer JD, Rodriguez-Lanetty M, Rosales SM, Saad OS, Sampayo EM, Santos SR, Shoguchi E, Smith EG, Stat M, Stephens TG, Strader ME, Suggett DJ, Swain TD, Tran C, Traylor-Knowles N, Voolstra CR, Warner ME, Weis VM, Wright RM, Xiang T, Yamashita H, Ziegler M, Correa AMS, Parkinson JE. 2023. Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. PeerJ, 11(June):e15023. DOI:10.7717/peerj.15023
Duran-Nebreda S, Valverde S. 2023. Composition, structure and robustness of Lichen guilds. Scientific Reports, 13(1):3295. DOI:10.1038/s41598-023-30357-w
Espeland M, Chazot N, Condamine FL, Lemmon AR, Lemmon EM, Pringle E, Heath A, Collins S, Tiren W, Mutiso M, Lees DC, Fisher S, Murphy R, Woodhall S, Tropek R, Ahlborn SS, Cockburn K, Dobson J, Bouyer T, Kaliszewska ZA, Baker CCM, Talavera G, Vila R, Gardiner AJ, Williams M, Martins DJ, Sáfián S, Edge DA, Pierce NE. 2023. Rapid radiation of ant parasitic butterflies during the Miocene aridification of Africa. Ecology and Evolution, 13(5):1-15. DOI:10.1002/ece3.10046
Fan K, Chu H, Eldridge DJ, Gaitan JJ, Liu YR, Sokoya B, Wang JT, Hu HW, He JZ, Sun W, Cui H, Alfaro FD, Abades S, Bastida F, Díaz-López M, Bamigboye AR, Berdugo M, Blanco-Pastor JL, Grebenc T, Duran J, Illán JG, Makhalanyane TP, Mukherjee A, Nahberger TU, Peñaloza-Bojacá GF, Plaza C, Verma JP, Rey A, Rodríguez A, Siebe C, Teixido AL, Trivedi P, Wang L, Wang J, Yang T, Zhou XQ, Zhou X, Zaady E, Tedersoo L, Delgado-Baquerizo M. 2023. Soil biodiversity supports the delivery of multiple ecosystem functions in urban greenspaces. Nature Ecology & Evolution, 7(1):113-126. DOI:10.1038/s41559-022-01935-4
Fernandez-Nicolas A, Machaj G, Ventos-Alfonso A, Pagone V, Minemura T, Ohde T, Daimon T, Ylla G, Belles X. 2023. Reduction of embryonic E93 expression as a hypothetical driver of the evolution of insect metamorphosis. Proceedings of the National Academy of Sciences, 120(7):2017. DOI:10.1073/pnas.2216640120
García-Berro A, Talla V, Vila R, Wai HK, Shipilina D, Chan KG, Pierce NE, Backström N, Talavera G. 2023. Migratory behaviour is positively associated with genetic diversity in butterflies. Molecular Ecology, 32(3):560-574. DOI:10.1111/mec.16770
Hinojosa JC, Montiel-Pantoja C, Sanjurjo-Franch M, Martínez-Pérez I, Lee KM, Mutanen M, Vila R. 2023. Diversification linked to larval host plant in the butterfly Eumedonia eumedon. Molecular Ecology, 32(1):182-197. DOI:10.1111/mec.16728
Höök L, Näsvall K, Vila R, Wiklund C, Backström N. 2023. High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.). Chromosome Research, 31(1):2. DOI:10.1007/s10577-023-09713-z.
Horváth V, Guirao-Rico S, Salces-Ortiz J, Rech GE, Green L, Aprea E, Rodeghiero M, Anfora G, González J. 2023. Gene expression differences consistent with water loss reduction underlie desiccation tolerance of natural Drosophila populations. BMC Biology, 21(1):35. DOI:10.1186/s12915-023-01530-4
Jaouen K, Tütken T, Bourgon N, Lüdecke T, Smith GM, Salazar-García DC, Hublin JJ, Villalba-Mouco V, Méjean P. 2023. Reply to Ben-Dor and Barkai: A low Zn isotope ratio is not equal to a low Zn content. Proceedings of the National Academy of Sciences, 120(6):4-5. DOI:10.1073/pnas.2218491120
Juan D, Santpere G, Kelley JL, Cornejo OE, Marques-Bonet T. 2023. Current advances in primate genomics: novel approaches for understanding evolution and disease. Nature Reviews Genetics, 24(5):314-331. DOI:10.1038/s41576-022-00554-w
Kin K, Chen ZH, Forbes G, Lawal H, Schilde C, Singh R, Cole C, Barton GJ, Schaap P. 2023. The protein kinases of Dictyostelia and their incorporation into a signalome. Cellular Signalling, 108. DOI:10.1016/j.cellsig.2023.110714
Lucas-Sánchez M, Fadhlaoui-Zid K, Comas D. 2023. The genomic analysis of current-day North African populations reveals the existence of trans-Saharan migrations with different origins and dates. Human Genetics, 142(2):305-320. DOI:10.1007/s00439-022-02503-3
Mackintosh A, Vila R, Laetsch DR, Hayward A, Martin SH, Lohse K. 2023. Chromosome Fissions and Fusions Act as Barriers to Gene Flow between Brenthis Fritillary Butterflies. Molecular Biology and Evolution, 40(3). DOI:10.1093/molbev/msad043
Martínez‐Redondo GI, Simón Guerrero C, Aristide L, Balart‐García P, Tonzo V, Fernández R. 2023. Parallel duplication and loss of aquaporin‐coding genes during the ‘out of the sea’ transition as potential key drivers of animal terrestrialization. Molecular Ecology, 32(8): 2022-2040. DOI:10.1111/mec.16854.
Menchetti M, Schifani E, Alicata A, Vila R. 2023. Quantitative morphology and mtDNA reveal that Lasius maltaeus is not endemic to the Maltese Islands (Hymenoptera, Formicidae). Journal of Hymenoptera Research, 95:129-142. DOI:10.3897/jhr.95.96365
Merenciano M, González J. 2023. The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion. Molecular Biology and Evolution, 40(3). DOI:10.1093/molbev/msad044
Mitsi K, Richter DJ, Arroyo AS, López-Escardó D, Antó M, Oterino AG, Ruiz-Trillo I. 2023. Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding. Scientific Reports, 13(1):3119. DOI:10.1038/s41598-023-30228-4
Muñoz-Gómez SA, Cadena LR, Gardiner AT, Leger MM, Sheikh S, Connell LB, Bilý T, Kopejtka K, Beatty JT, Koblížek M, Roger AJ, Slamovits CH, Lukeš J, Hashimi H. 2023. Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60. Current Biology, 33(6):1099-1111.e6. DOI:10.1016/j.cub.2023.02.059
Muntané G, Vázquez-Bourgon J, Sada E, Martorell L, Papiol S, Bosch E, Navarro A, Crespo-Facorro B, Vilella E. 2023. Polygenic risk scores enhance prediction of body mass index increase in individuals with a first episode of psychosis. European Psychiatry, 66(1):e28. DOI:10.1192/j.eurpsy.2023.9
Murat F, Mbengue N, Winge SB, Trefzer T, Leushkin E, Sepp M, Cardoso-Moreira M, Schmidt J, Schneider C, Mößinger K, Brüning T, Lamanna F, Belles MR, Conrad C, Kondova I, Bontrop R, Behr R, Khaitovich P, Pääbo S, Marques-Bonet T, Grützner F, Almstrup K, Schierup MH, Kaessmann H. 2023. The molecular evolution of spermatogenesis across mammals. Nature, 613(7943):308-316. DOI:10.1038/s41586-022-05547-7
Oliveira P, Gomes V, Riaño G, Rato C. 2023. Ontogenic differences and sexual dimorphism of the locomotor performance in a nocturnal gecko, Tarentola mauritanica. Journal of Experimental Zoology Part A: Ecological and Integrative Physiology, 339(1):28-36. DOI:10.1002/jez.2645
Rosales SM, Huebner LK, Evans JS, Apprill A, Baker AC, Becker CC, Bellantuono AJ, Brandt ME, Clark AS, Del Campo J, Dennison CE, Eaton KR, Huntley NE, Kellogg CA, Medina M, Meyer JL, Muller EM, Rodriguez-Lanetty M, Salerno JL, Schill WB, Shilling EN, Stewart JM, Voss JD. 2023. A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies. ISME Communications, 3(1):19. DOI:10.1038/s43705-023-00220-0
Ros-Rocher N, Kidner RQ, Gerdt C, Davidson WS, Ruiz-Trillo I, Gerdt JP. 2023. Chemical factors induce aggregative multicellularity in a close unicellular relative of animals. Proceedings of the National Academy of Sciences, 120(18):2017. DOI:10.1073/pnas.2216668120
Rumbo M, Pagone V, Piulachs MD. 2023. Diverse functions of the ecdysone receptor (EcR) in the panoistic ovary of the German cockroach. Insect Biochemistry and Molecular Biology, 156(March):103935. DOI:10.1016/j.ibmb.2023.103935
Schifani E, Alicata A, Borowiec L, García F, Gentile V, Gómez K, Nalini E, Rigato F, Schär S, Scupola A, Vila R, Menchetti M. 2023. Unrecognized for centuries: distribution and sexual caste descriptions of the West European Aphaenogaster species of the subterranea group (Hymenoptera, Formicidae). ZooKeys, 1153:141-156. DOI:10.3897/zookeys.1153.98297
Shabardina V, Charria PR, Saborido GB, Diaz-Mora E, Cuenda A, Ruiz-Trillo I, Sanz-Ezquerro JJ. 2023. Evolutionary analysis of p38 stress-activated kinases in unicellular relatives of animals suggests an ancestral function in osmotic stress. Open Biology, 13(1):2022.04.24.489300. DOI:10.1098/rsob.220314.
Solís-Moruno M, Batlle-Masó L, Bonet N, Aróstegui JI, Casals F. 2023. Somatic genetic variation in healthy tissue and non-cancer diseases. European Journal of Human Genetics, 31(1):48-54. DOI:10.1038/s41431-022-01213-8.
Talavera G, García-Berro A, Talla VNK, Ng'iru I, Bahleman F, Kébé K, Nzala KM, Plasencia D, Marafi MAJ, Kassie A, Goudégnon EOA, Kiki M, Benyamini D, Reich MS, López-Mañas R, Benetello F, Collins SC, Bataille CP, Pierce NE, Martins DJ, Suchan T, Menchetti M, Vila R. 2023. The Afrotropical breeding grounds of the Palearctic-African migratory painted lady butterflies (Vanessa cardui). Proceedings of the National Academy of Sciences, 120(16):2017. DOI:10.1073/pnas.2218280120
Theissinger K, Fernandes C, Formenti G, Bista I, Berg PR, Bleidorn C, Bombarely A, Crottini A, Gallo GR, Godoy JA, Jentoft S, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, Ruiz-López MJ, Secomandi S, Svardal H, Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Jarvis ED, Bálint M, Ciofi C, Waterhouse RM, Mazzoni CJ, Höglund J; European Reference Genome Atlas Consortium. 2023. How genomics can help biodiversity conservation. Trends in Genetics. DOI:10.1016/j.tig.2023.01.005
Vilar-Ribó L, Cabana-Domínguez J, Martorell L, Ramos-Quiroga JA, Sanchez-Roige S, Palmer AA, Vilella E, Ribasés M, Muntané G, Soler Artigas M. 2023. Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan. Neuropsychopharmacology, 48(7):981-990. DOI:10.1038/s41386-023-01555-x
Vila R, Lohse K, Hayward A, Laetsch DR, Wright C. 2023. The genome sequence of the Chalkhill Blue, Lysandra coridon (Poda, 1761). Wellcome Open Research, 8(May):162. DOI:10.12688/wellcomeopenres.19253.1
Vilà-Valls L, Aizpurua-Iraola J, Casinge S, Bojs K, Flores-Bello A, Font-Porterias N, Comas D. 2023. Genomic insights into the population history of the Resande or Swedish Travellers. Genome Biology and Evolution, 15(2). DOI:10.1093/gbe/evad006.
Villalba-Mouco V, van de Loosdrecht MS, Rohrlach AB, Fewlass H, Talamo S, Yu H, Aron F, Lalueza-Fox C, Cabello L, Cantalejo Duarte P, Ramos-Muñoz J, Posth C, Krause J, Weniger GC, Haak W. 2023. A 23,000-year-old southern Iberian individual links human groups that lived in Western Europe before and after the Last Glacial Maximum. Nature Ecology & Evolution, 7(4):597-609. DOI:10.1038/s41559-023-01987-0
Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK; Zoonomia Consortium‡; Ryder OA, Shapiro B, Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, Breit AM, Christmas MJ, Clawson H, Damas J, Di Palma F, Diekhans M, Dong MX, Eizirik E, Fan K, Fanter C, Foley NM, Forsberg-Nilsson K, Garcia CJ, Gatesy J, Gazal S, Genereux DP, Goodman L, Grimshaw J, Halsey MK, Harris AJ, Hickey G, Hiller M, Hindle AG, Hubley RM, Hughes GM, Johnson J, Juan D, Kaplow IM, Karlsson EK, Keough KC, Kirilenko B, Koepfli KP, Korstian JM, Kowalczyk A, Kozyrev SV, Lawler AJ, Lawless C, Lehmann T, Levesque DL, Lewin HA, Li X, Lind A, Lindblad-Toh K, Mackay-Smith A, Marinescu VD, Marques-Bonet T, Mason VC, Meadows JRS, Meyer WK, Moore JE, Moreira LR, Moreno-Santillan DD, Morrill KM, Muntané G, Murphy WJ, Navarro A, Nweeia M, Ortmann S, Osmanski A, Paten B, Paulat NS, Pfenning AR, Phan BN, Pollard KS, Pratt HE, Ray DA, Reilly SK, Rosen JR, Ruf I, Ryan L, Ryder OA, Sabeti PC, Schäffer DE, Serres A, Shapiro B, Smit AFA, Springer M, Srinivasan C, Steiner C, Storer JM, Sullivan KAM, Sullivan PF, Sundström E, Supple MA, Swofford R, Talbot JE, Teeling E, Turner-Maier J, Valenzuela A, Wagner F, Wallerman O, Wang C, Wang J, Weng Z, Wilder AP, Wirthlin ME, Xue JR, Zhang X. 2023. The contribution of historical processes to contemporary extinction risk in placental mammals. Science, 380(6643). DOI:10.1126/science.abn5856
Zhang P, Zhu Y, Guo Q, Li J, Zhan X, Yu H, Xie N, Tan H, Lundholm N, Garcia-Cuetos L, Martin MD, Subirats MA, Su YH, Ruiz-Trillo I, Martindale MQ, Yu JK, Gilbert MTP, Zhang G, Li Q. 2023. On the origin and evolution of RNA editing in metazoans. Cell Reports, 42(2):112112. DOI:10.1016/j.celrep.2023.112112