Research lines

The study of the structure, function and organisation of ancestral genomes are the focal points of the Paleogenomics lab. More specifically, it looks at the different evolutionary problems that can be answered with ancient DNA data, such as those involving human evolution, population dynamics and diversity, as well as adaptive processes and past migrations. This lab works with ancient modern humans and with an extinct hominin species, Neanderthals. Regarding the latter, the research carried out to date has mainly been focused on genomic diversity among Neanderthals and the individualisation of a Neanderthal family group from El Sidrón, an archaeological site in the Asturias region of northern Spain. The Paleogenomics lab is also investigating the evolutionary dynamics and past migrations in European prehistory through the analysis of Mesolithic, Neolithic, Copper Age and Bronze Age human genomes.

Lab website: Paleogenomics Lab

Principal Investigator

Carles Lalueza Fox

Lalueza Fox, Carles
CSIC Research Scientist
Paleogenomics Lab

Current members

Pablo Carrion Quilis

Carrion Quilis, Pablo
Predoctoral Researcher
Paleogenomics

de Dios Martinez, Antonio
Laboratory Technician
Paleogenomics

Pere Renom Vilaró

Renom Vilaró, Pere
Predoctoral Researcher
Paleogenomics

Ongoing projects

Publications

Patterson N, Isakov M, Booth T, Büster L, Fischer CE, Olalde I, Ringbauer H, Akbari A, Cheronet O, Bleasdale M, Adamski N, Altena E, Bernardos R, Brace S, Broomandkhoshbacht N, Callan K, Candilio F, Culleton B, Curtis E, Demetz L, Carlson KSD, Fernandes DM, Foody MGB, Freilich S, Goodchild H, Kearns A, Lawson AM, Lazaridis I, Mah M, Mallick S, Mandl K, Micco A, Michel M, Morante GB, Oppenheimer J, Özdoğan KT, Qiu L, Schattke C, Stewardson K, Workman JN, Zalzala F, Zhang Z, Agustí B, Allen T, Almássy K, Amkreutz L, Ash A, Baillif-Ducros C, Barclay A, Bartosiewicz L, Baxter K, Bernert Z, Blažek J, Bodružić M, Boissinot P, Bonsall C, Bradley P, Brittain M, Brookes A, Brown F, Brown L, Brunning R, Budd C, Burmaz J, Canet S, Carnicero-Cáceres S, Čaušević-Bully M, Chamberlain A, Chauvin S, Clough S, Čondić N, Coppa A, Craig O, Črešnar M, Cummings V, Czifra S, Danielisová A, Daniels R, Davies A, de Jersey P, Deacon J, Deminger C, Ditchfield PW, Dizdar M, Dobeš M, Dobisíková M, Domboróczki L, Drinkall G, Đukić A, Edwards CJ, Ernée M, Evans C, Evans J, Fernández-Götz M, Filipović S, Fitzpatrick A, Fokkens H, Fowler C, Fox A, Gallina Z, Gamble M, González Morales MR, González-Rabanal B, Green A, Gyenesei K, Habermehl D, Hajdu T, Hamilton D, Harris J, Hayden C, Hendriks J, Hernu B, Hey G, Horňák M, Ilon G, Istvánovits E, Jones AM, Kavur MB, Kazek K, Kenyon RA, Khreisheh A, Kiss V, Kleijne J, Knight M, Kootker LM, Kovács PF, Kozubová A, Kulcsár G, Kulcsár V, Le Pennec C, Legge M, Leivers M, Loe L, López-Costas O, Lord T, Los D, Lyall J, Marín-Arroyo AB, Mason P, Matošević D, Maxted A, McIntyre L, McKinley J, McSweeney K, Meijlink B, Mende BG, Menđušić M, Metlička M, Meyer S, Mihovilić K, Milasinovic L, Minnitt S, Moore J, Morley G, Mullan G, Musilová M, Neil B, Nicholls R, Novak M, Pala M, Papworth M, Paresys C, Patten R, Perkić D, Pesti K, Petit A, Petriščáková K, Pichon C, Pickard C, Pilling Z, Price TD, Radović S, Redfern R, Resutík B, Rhodes DT, Richards MB, Roberts A, Roefstra J, Sankot P, Šefčáková A, Sheridan A, Skae S, Šmolíková M, Somogyi K, Somogyvári Á, Stephens M, Szabó G, Szécsényi-Nagy A, Szeniczey T, Tabor J, Tankó K, Maria CT, Terry R, Teržan B, Teschler-Nicola M, Torres-Martínez JF, Trapp J, Turle R, Ujvári F, van der Heiden M, Veleminsky P, Veselka B, Vytlačil Z, Waddington C, Ware P, Wilkinson P, Wilson L, Wiseman R, Young E, Zaninović J, Žitňan A, Lalueza-Fox C, de Knijff P, Barnes I, Halkon P, Thomas MG, Kennett DJ, Cunliffe B, Lillie M, Rohland N, Pinhasi R, Armit I, Reich D. 2022. Large-scale migration into Britain during the Middle to Late Bronze Age. Nature, 601(7894):588-594. DOI:10.1038/s41586-021-04287-4

Lalueza-Fox C. 2022. Human genetics: A tale of two historical Jewish communities. Current Biology, 32(20):R1023-R1025. DOI:10.1016/j.cub.2022.09.029

Joshi RS, Rigau M, García-Prieto CA, Castro de Moura M, Piñeyro D, Moran S, Davalos V, Carrión P, Ferrando-Bernal M, Olalde I, Lalueza-Fox C, Navarro A, Fernández-Tena C, Aspandi D, Sukno FM, Binefa X, Valencia A, Esteller M. 2022. Look-alike humans identified by facial recognition algorithms show genetic similarities. Cell Reports, 40(8):111257. DOI:10.1016/j.celrep.2022.111257

Gopalakrishnan S, Ebenesersdóttir SS, Lundstrøm IKC, Turner-Walker G, Moore KHS, Luisi P, Margaryan A, Martin MD, Ellegaard MR, Magnússon ÓÞ, Sigurðsson Á, Snorradóttir S, Magnúsdóttir DN, Laffoon JE, van Dorp L, Liu X, Moltke I, Ávila-Arcos MC, Schraiber JG, Rasmussen S, Juan D, Gelabert P, de-Dios T, Fotakis AK, Iraeta-Orbegozo M, Vågene ÅJ, Denham SD, Christophersen A, Stenøien HK, Vieira FG, Liu S, Günther T, Kivisild T, Moseng OG, Skar B, Cheung C, Sandoval-Velasco M, Wales N, Schroeder H, Campos PF, Guðmundsdóttir VB, Sicheritz-Ponten T, Petersen B, Halgunset J, Gilbert E, Cavalleri GL, Hovig E, Kockum I, Olsson T, Alfredsson L, Hansen TF, Werge T, Willerslev E, Balloux F, Marques-Bonet T, Lalueza-Fox C, Nielsen R, Stefánsson K, Helgason A, Gilbert MTP. 2022. The population genomic legacy of the second plague pandemic. Current Biology. DOI:10.1016/j.cub.2022.09.023

Andrades Valtueña A, Neumann GU, Spyrou MA, Musralina L, Aron F, Beisenov A, Belinskiy AB, Bos KI, Buzhilova A, Conrad M, Djansugurova LB, Dobeš M, Ernée M, Fernández-Eraso J, Frohlich B, Furmanek M, Hałuszko A, Hansen S, Harney É, Hiss AN, Hübner A, Key FM, Khussainova E, Kitov E, Kitova AO, Knipper C, Kühnert D, Lalueza-Fox C, Littleton J, Massy K, Mittnik A, Mujika-Alustiza JA, Olalde I, Papac L, Penske S, Peška J, Pinhasi R, Reich D, Reinhold S, Stahl R, Stäuble H, Tukhbatova RI, Vasilyev S, Veselovskaya E, Warinner C, Stockhammer PW, Haak W, Krause J, Herbig A. 2022. Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences, 119(17):1-11. DOI:10.1073/pnas.2116722119

White AE, de-Dios T, Carrión P, Bonora GL, Llovera L, Cilli E, Lizano E, Khabdulina MK, Tleugabulov DT, Olalde I, Marquès-Bonet T, Balloux F, Pettener D, van Dorp L, Luiselli D, Lalueza-Fox C. 2021. Genomic Analysis of 18th-Century Kazakh Individuals and Their Oral Microbiome. Biology, 10(12):1324. DOI:10.3390/biology10121324

Villalba-Mouco V, Oliart C, Rihuete-Herrada C, Childebayeva A, Rohrlach AB, Fregeiro MI, Celdrán Beltrán E, Velasco-Felipe C, Aron F, Himmel M, Freund C, Alt KW, Salazar-García DC, García Atiénzar G, de Miguel Ibáñez MP, Hernández Pérez MS, Barciela V, Romero A, Ponce J, Martínez A, Lomba J, Soler J, Martínez AP, Avilés Fernández A, Haber-Uriarte M, Roca de Togores Muñoz C, Olalde I, Lalueza-Fox C, Reich D, Krause J, García Sanjuán L, Lull V, Micó R, Risch R, Haak W. 2021. Genomic transformation and social organization during the Copper Age–Bronze Age transition in southern Iberia. Science Advances, 7(47):22-27. DOI:10.1126/sciadv.abi7038

Renom P, de-Dios T, Civit S, Llovera L, Sánchez-Gracia A, Lizano E, Rando JC, Marquès-Bonet T, Kergoat GJ, Casanovas-Vilar I, Lalueza-Fox C. 2021. Genetic data from the extinct giant rat from Tenerife (Canary Islands) points to a recent divergence from mainland relatives. Biology Letters, 17(12):0-5. DOI:10.1098/rsbl.2021.0533

Lalueza-Fox C. 2021. Neanderthal assimilation? Nature Ecology & Evolution, 5(6):711-712. DOI: 10.1038/s41559-021-01421-3. 

de-Dios T, Carrión P, Olalde I, Nadal LL, Lizano E, Pàmies D, Marques-Bonet T, Balloux F, van Dorp L, Lalueza-Fox C. 2021. Salmonella enterica from a soldier from the 1652-siege of Barcelona (Spain) supports historical transatlantic epidemic contacts. iScience, 24(9):103021. DOI:10.1016/j.isci.2021.103021

Alpaslan-Roodenberg S, Anthony D, Babiker H, Bánffy E, Booth T, Capone P, Deshpande-Mukherjee A, Eisenmann S, Fehren-Schmitz L, Frachetti M, Fujita R, Frieman CJ, Fu Q, Gibbon V, Haak W, Hajdinjak M, Hofmann KP, Holguin B, Inomata T, Kanzawa-Kiriyama H, Keegan W, Kelso J, Krause J, Kumaresan G, Kusimba C, Kusimba S, Lalueza-Fox C, Llamas B, MacEachern S, Mallick S, Matsumura H, Morales-Arce AY, Matuzeviciute GM, Mushrif-Tripathy V, Nakatsuka N, Nores R, Ogola C, Okumura M, Patterson N, Pinhasi R, Prasad SPR, Prendergast ME, Punzo JL, Reich D, Sawafuji R, Sawchuk E, Schiffels S, Sedig J, Shnaider S, Sirak K, Skoglund P, Slon V, Snow M, Soressi M, Spriggs M, Stockhammer PW, Szécsényi-Nagy A, Thangaraj K, Tiesler V, Tobler R, Wang CC, Warinner C, Yasawardene S, Zahir M. 2021. Ethics of DNA research on human remains: five globally applicable guidelines. Nature, 25-27. DOI:10.1038/s41586-021-04008-x

Welker F, Ramos-Madrigal J, Gutenbrunner P, Mackie M, Tiwary S, Rakownikow Jersie-Christensen R, Chiva C, Dickinson MR, Kuhlwilm M, de Manuel M, Gelabert P, Martinón-Torres M, Margvelashvili A, Arsuaga JL, Carbonell E, Marques-Bonet T, Penkman K, Sabidó E, Cox J, Olsen JV, Lordkipanidze D, Racimo F, Lalueza-Fox C, Bermúdez de Castro JM, Willerslev E, Cappellini E. 2020. The dental proteome of Homo antecessor. Nature, 580(7802):235-238. DOI:10.1038/s41586-020-2153-8

van Dorp L, Gelabert P, Rieux A, de Manuel M, de-Dios T, Gopalakrishnan S, Carøe C, Sandoval-Velasco M, Fregel R, Olalde I, Escosa R, Aranda C, Huijben S, Mueller I, Marquès-Bonet T, Balloux F, Gilbert MTP, Lalueza-Fox C. 2020. Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain. Molecular Biology and Evolution, 37(3):773–785. DOI: 10.1093/molbev/msz264

Racimo F, Sikora M, Vander Linden M, Schroeder H, Lalueza-Fox C. 2020. Beyond broad strokes: sociocultural insights from the study of ancient genomes. Nature Reviews Genetics, 21(6):355-366. DOI:10.1038/s41576-020-0218-z

Petr M, Hajdinjak M, Fu Q, Essel E, Rougier H, Crevecoeur I, Semal P, Golovanova LV, Doronichev VB, Lalueza-Fox C, de la Rasilla M, Rosas A, Shunkov MV, Kozlikin MB, Derevianko AP, Vernot B, Meyer M, Kelso J. 2020. The evolutionary history of Neanderthal and Denisovan Y chromosomes. Science, 369(6511):1653-1656. DOI:10.1126/science.abb6460

Nakatsuka N, Luisi P, Motti JMB, Salemme M, Santiago F, D'Angelo Del Campo MD, Vecchi RJ, Espinosa-Parrilla Y, Prieto A, Adamski N, Lawson AM, Harper TK, Culleton BJ, Kennett DJ, Lalueza-Fox C, Mallick S, Rohland N, Guichón RA, Cabana GS, Nores R, Reich D. 2020. Ancient genomes in South Patagonia reveal population movements associated with technological shifts and geography. Nature Communications, 11(1):3868. DOI: 10.1038/s41467-020-17656-w.

Nägele K, Posth C, Iraeta Orbegozo M, Chinique de Armas Y, Hernández Godoy ST, González Herrera UM, Nieves-Colón MA, Sandoval-Velasco M, Mylopotamitaki D, Radzeviciute R, Laffoon J, Pestle WJ, Ramos-Madrigal J, Lamnidis TC, Schaffer WC, Carr RS, Day JS, Arredondo Antúnez C, Rangel Rivero A, Martínez-Fuentes AJ, Crespo-Torres E, Roksandic I, Stone AC, Lalueza-Fox C, Hoogland M, Roksandic M, Hofman CL, Krause J, Schroeder H. 2020. Genomic insights into the early peopling of the Caribbean. Science, 369(6502):456-460. DOI:10.1126/science.aba8697

Lipson M, Ribot I, Mallick S, Rohland N, Olalde I, Adamski N, Broomandkhoshbacht N, Lawson AM, López S, Oppenheimer J, Stewardson K, Asombang RN, Bocherens H, Bradman N, Culleton BJ, Cornelissen E, Crevecoeur I, de Maret P, Fomine FLM, Lavachery P, Mindzie CM, Orban R, Sawchuk E, Semal P, Thomas MG, Van Neer W, Veeramah KR, Kennett DJ, Patterson N, Hellenthal G, Lalueza-Fox C, MacEachern S, Prendergast ME, Reich D. 2020. Ancient West African foragers in the context of African population history. Nature, 577(7792):665–670. DOI: 10.1038/s41586-020-1929-1.

Harding T, Milot E, Moreau C, Lefebvre JF, Bournival JS, Vézina H, Laprise C, Lalueza-Fox C, Anglada R, Loewen B, Casals F, Ribot I, Labuda D. Historical human remains identification through maternal and paternal genetic signatures in a founder population with extensive genealogical record. 2020. Historical human remains identification through maternal and paternal genetic signatures in a founder population with extensive genealogical record. American Journal of Physical Anthropology, 171(4):645–658. DOI: 10.1002/ajpa.24024

Gokhman D, Nissim-Rafinia M, Agranat-Tamir L, Housman G, García-Pérez R, Lizano E, Cheronet O, Mallick S, Nieves-Colón MA, Li H, Alpaslan-Roodenberg S, Novak M, Gu H, Osinski JM, Ferrando-Bernal M, Gelabert P, Lipende I, Mjungu D, Kondova I, Bontrop R, Kullmer O, Weber G, Shahar T, Dvir-Ginzberg M, Faerman M, Quillen EE, Meissner A, Lahav Y, Kandel L, Liebergall M, Prada ME, Vidal JM, Gronostajski RM, Stone AC, Yakir B, Lalueza-Fox C, Pinhasi R, Reich D, Marques-Bonet T, Meshorer E, Carmel L. 2020. Differential DNA methylation of vocal and facial anatomy genes in modern humans. Nature Communications, 11(1):1189. DOI: 10.1038/s41467-020-15020-6.

Gelabert P, Sandoval-Velasco M, Serres A, de Manuel M, Renom P, Margaryan A, Stiller J, de-Dios T, Fang Q, Feng S, Mañosa S, Pacheco G, Ferrando-Bernal M, Shi G, Hao F, Chen X, Petersen B, Olsen RA, Navarro A, Deng Y, Dalén L, Marquès-Bonet T, Zhang G, Antunes A, Gilbert MTP, Lalueza-Fox C. 2020. Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Current Biology, 30(1):108-114. DOI: 10.1016/j.cub.2019.10.066

Ferrando-Bernal M, Morcillo-Suarez C, De-Dios T, Gelabert P, Civit S, Díaz-Carvajal A, Ollich-Castanyer I, Allentoft ME, Valverde S, Lalueza-Fox C. 2020. Mapping co-ancestry connections between the genome of a Medieval individual and modern Europeans. Scientific Reports, 10(1):6843. DOI: 10.1038/s41598-020-64007-2

Fernandes DM, Mittnik A, Olalde I, Lazaridis I, Cheronet O, Rohland N, Mallick S, Bernardos R, Broomandkhoshbacht N, Carlsson J, Culleton BJ, Ferry M, Gamarra B, Lari M, Mah M, Michel M, Modi A, Novak M, Oppenheimer J, Sirak KA, Stewardson K, Mandl K, Schattke C, Özdoğan KT, Lucci M, Gasperetti G, Candilio F, Salis G, Vai S, Camarós E, Calò C, Catalano G, Cueto M, Forgia V, Lozano M, Marini E, Micheletti M, Miccichè RM, Palombo MR, Ramis D, Schimmenti V, Sureda P, Teira L, Teschler-Nicola M, Kennett DJ, Lalueza-Fox C, Patterson N, Sineo L, Coppa A, Caramelli D, Pinhasi R, Reich D. 2020. The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean. Nature Ecology & Evolution, 4(3): 334–345. DOI: 10.1038/s41559-020-1102-0.

de-Dios T, van Dorp L, Charlier P, Morfopoulou S, Lizano E, Bon C, Le Bitouzé C, Alvarez-Estape M, Marquès-Bonet T, Balloux F, Lalueza-Fox C. 2020. Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743–1793). Infection, Genetics and Evolution, 80(104209). DOI: 10.1016/j.meegid.2020.104209

Welker F, Ramos-Madrigal J, Kuhlwilm M, Liao W, Gutenbrunner P, de Manuel M, Samodova D, Mackie M, Allentoft ME, Bacon AM, Collins MJ, Cox J, Lalueza-Fox C, Olsen JV, Demeter F, Wang W, Marques-Bonet T, Cappellini E. 2019. Enamel proteome shows that Gigantopithecus was an early diverging pongine. Nature, 576(7786):262-265. DOI:10.1038/s41586-019-1728-8

Ríos L, Kivell TL, Lalueza-Fox C, Estalrrich A, García-Tabernero A, Huguet R, Quintino Y, de la Rasilla M, Rosas A. 2019. Skeletal Anomalies in The Neandertal Family of El Sidrón (Spain) Support A Role of Inbreeding in Neandertal Extinction. Scientific Reports, 9(1):1-11. DOI:10.1038/s41598-019-38571-1

Olalde I, Mallick S, Patterson N, Rohland N, Villalba-Mouco V, Silva M, Dulias K, Edwards CJ, Gandini F, Pala M, Soares P, Ferrando-Bernal M, Adamski N, Broomandkhoshbacht N, Cheronet O, Culleton BJ, Fernandes D, Lawson AM, Mah M, Oppenheimer J, Stewardson K, Zhang Z, Jiménez Arenas JM, Toro Moyano IJ, Salazar-García DC, Castanyer P, Santos M, Tremoleda J, Lozano M, García Borja P, Fernández-Eraso J, Mujika-Alustiza JA, Barroso C, Bermúdez FJ, Viguera Mínguez E, Burch J, Coromina N, Vivó D, Cebrià A, Fullola JM, García-Puchol O, Morales JI, Oms FX, Majó T, Vergès JM, Díaz-Carvajal A, Ollich-Castanyer I, López-Cachero FJ, Silva AM, Alonso-Fernández C, Delibes de Castro G, Jiménez Echevarría J, Moreno-Márquez A, Pascual Berlanga G, Ramos-García P, Ramos-Muñoz J, Vijande Vila E, Aguilella Arzo G, Esparza Arroyo Á, Lillios KT, Mack J, Velasco-Vázquez J, Waterman A, Benítez de Lugo Enrich L, Benito Sánchez M, Agustí B, Codina F, de Prado G, Estalrrich A, Fernández Flores Á, Finlayson C, Finlayson G, Finlayson S, Giles-Guzmán F, Rosas A, Barciela González V, García Atiénzar G, Hernández Pérez MS, Llanos A, Carrión Marco Y, Collado Beneyto I, López-Serrano D, Sanz Tormo M, Valera AC, Blasco C, Liesau C, Ríos P, Daura J, de Pedro Michó MJ, Diez-Castillo AA, Flores Fernández R, Francès Farré J, Garrido-Pena R, Gonçalves VS, Guerra-Doce E, Herrero-Corral AM, Juan-Cabanilles J, López-Reyes D, McClure SB, Merino Pérez M, Oliver Foix A, Sanz Borràs M, Sousa AC, Vidal Encinas JM, Kennett DJ, Richards MB, Werner Alt K, Haak W, Pinhasi R, Lalueza-Fox C, Reich D. 2019. The genomic history of Iberian Peninsula in the last 8000 years. Science, 363:1230-1234. DOI: 10.1126/science.aav4040

Narasimhan VM, Patterson N, Moorjani P, Rohland N, Bernardos R, Mallick S, Lazaridis I, Nakatsuka N, Olalde I, Lipson M, Kim AM, Olivieri LM, Coppa A, Vidale M, Mallory J, Moiseyev V, Kitov E, Monge J, Adamski N, Alex N, Broomandkhoshbacht N, Candilio F, Callan K, Cheronet O, Culleton BJ, Ferry M, Fernandes D, Freilich S, Gamarra B, Gaudio D, Hajdinjak M, Harney É, Harper TK, Keating D, Lawson AM, Mah M, Mandl K, Michel M, Novak M, Oppenheimer J, Rai N, Sirak K, Slon V, Stewardson K, Zalzala F, Zhang Z, Akhatov G, Bagashev AN, Bagnera A, Baitanayev B, Bendezu-Sarmiento J, Bissembaev AA, Bonora GL, Chargynov TT, Chikisheva T, Dashkovskiy PK, Derevianko A, Dobeš M, Douka K, Dubova N, Duisengali MN, Enshin D, Epimakhov A, Fribus AV, Fuller D, Goryachev A, Gromov A, Grushin SP, Hanks B, Judd M, Kazizov E, Khokhlov A, Krygin AP, Kupriyanova E, Kuznetsov P, Luiselli D, Maksudov F, Mamedov AM, Mamirov TB, Meiklejohn C, Merrett DC, Micheli R, Mochalov O, Mustafokulov S, Nayak A, Pettener D, Potts R, Razhev D, Rykun M, Sarno S, Savenkova TM, Sikhymbaeva K, Slepchenko SM, Soltobaev OA, Stepanova N, Svyatko S, Tabaldiev K, Teschler-Nicola M, Tishkin AA, Tkachev VV, Vasilyev S, Velemínský P, Voyakin D, Yermolayeva A, Zahir M, Zubkov VS, Zubova A, Shinde VS, Lalueza-Fox C, Meyer M, Anthony D, Boivin N, Thangaraj K, Kennett DJ, Frachetti M, Pinhasi R, Reich D. 2019. The formation of human populations in South and Central Asia. Science, 365(6457). DOI:10.1126/science.aat7487

Giner-Delgado C, Villatoro S, Lerga-Jaso J, Gayà-Vidal M, Oliva M, Castellano D, Pantano L, Bitarello BD, Izquierdo D, Noguera I, Olalde I, Delprat A, Blancher A, Lalueza-Fox C, Esko T, O'Reilly PF, Andrés AM, Ferretti L, Puig M, Cáceres M. 2019. Evolutionary and functional impact of common polymorphic inversions in the human genome. Nature Communications, 10(1):1-14. DOI:10.1038/s41467-019-12173-x

Gelabert P, Ferrando-Bernal M, de-Dios T, Mattorre B, Campoy E, Gorostiza A, Patin E, González-Martín A, Lalueza-Fox C. 2019. Genome-wide data from the Bubi of Bioko Island clarifies the Atlantic fringe of the Bantu dispersal. BMC Genomics, (1):1-13. DOI:10.1186/s12864-019-5529-0

de-Dios T, van Dorp L, Gelabert P, Carøe C, Sandoval-Velasco M, Fregel R, Escosa R, Aranda C, Huijben S, Balloux F, Gilbert MTP, Lalueza-Fox C. 2019. Genetic affinities of an eradicated european plasmodium falciparum strain. Microbial Genomics, 5(9). DOI:10.1099/mgen.0.000289

Rosas A, Ríos L, Estalrrich A, Liversidge H, García-Tabernero A, Huguet R, Cardoso H, Bastir M, Lalueza-Fox C, de la Rasilla M, Dean C. 2018. Response to comment on “The growth pattern of Neandertals, reconstructed from a juvenile skeleton from El Sidrón (Spain).” Science, 359(6380):9-11. DOI:10.1126/science.aar3820

Olalde I, Brace S, Allentoft ME, Armit I, Kristiansen K, Booth T, Rohland N, Mallick S, Szécsényi-Nagy A, Mittnik A, Altena E, Lipson M, Lazaridis I, Harper TK, Patterson N, Broomandkhoshbacht N, Diekmann Y, Faltyskova Z, Fernandes D, Ferry M, Harney E, de Knijff P, Michel M, Oppenheimer J, Stewardson K, Barclay A, Alt KW, Liesau C, Ríos P, Blasco C, Miguel JV, García RM, Fernández AA, Bánffy E, Bernabò-Brea M, Billoin D, Bonsall C, Bonsall L, Allen T, Büster L, Carver S, Navarro LC, Craig OE, Cook GT, Cunliffe B, Denaire A, Dinwiddy KE, Dodwell N, Ernée M, Evans C, Kuchařík M, Farré JF, Fowler C, Gazenbeek M, Pena RG, Haber-Uriarte M, Haduch E, Hey G, Jowett N, Knowles T, Massy K, Pfrengle S, Lefranc P, Lemercier O, Lefebvre A, Martínez CH, Olmo VG, Ramírez AB, Maurandi JL, Majó T, McKinley JI, McSweeney K, Mende BG, Modi A, Kulcsár G, Kiss V, Czene A, Patay R, Endrődi A, Köhler K, Hajdu T, Szeniczey T, Dani J, Bernert Z, Hoole M, Cheronet O, Keating D, Velemínský P, Dobeš M, Candilio F, Brown F, Fernández RF, Herrero-Corral AM, Tusa S, Carnieri E, Lentini L, Valenti A, Zanini A, Waddington C, Delibes G, Guerra-Doce E, Neil B, Brittain M, Luke M, Mortimer R, Desideri J, Besse M, Brücken G, Furmanek M, Hałuszko A, Mackiewicz M, Rapiński A, Leach S, Soriano I, Lillios KT, Cardoso JL, Pearson MP, Włodarczak P, Price TD, Prieto P, Rey PJ, Risch R, Rojo Guerra MA, Schmitt A, Serralongue J, Silva AM, Smrčka V, Vergnaud L, Zilhão J, Caramelli D, Higham T, Thomas MG, Kennett DJ, Fokkens H, Heyd V, Sheridan A, Sjögren KG, Stockhammer PW, Krause J, Pinhasi R, Haak W, Barnes I, Lalueza-Fox C, Reich D. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695):190-196. DOI:10.1038/nature25738

Lalueza-Fox C. 2018. A brief history of palaeogenomics: How a young discipline revolutionised the study of the past. Metode, 8:91-97. DOI:10.7203/metode.8.9226

Gómez-Sánchez D, Olalde I, Sastre N, Enseñat C, Carrasco R, Marques-Bonet T, Lalueza-Fox C, Leonard JA, Vilà C, Ramírez O. 2018. On the path to extinction: Inbreeding and admixture in a declining grey wolf population. Molecular Ecology, 27(18):3599-3612. DOI:10.1111/mec.14824

Ebenesersdóttir SS, Sandoval-Velasco M, Gunnarsdóttir ED, Jagadeesan A, Guðmundsdóttir VB, Thordardóttir EL, Einarsdóttir MS, Moore KHS, Sigurðsson Á, Magnúsdóttir DN, Jónsson H, Snorradóttir S, Hovig E, Møller P, Kockum I, Olsson T, Alfredsson L, Hansen TF, Werge T, Cavalleri GL, Gilbert E, Lalueza-Fox C, Walser JW 3rd, Kristjánsdóttir S, Gopalakrishnan S, Árnadóttir L, Magnússon ÓÞ, Gilbert MTP, Stefánsson K, Helgason A. 2018. Ancient genomes from Iceland reveal the making of a human population. Science, 360(6392):1028-1032. DOI:10.1126/science.aar2625

Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Cooper A. 2017. Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature, 544(7650):357-361. DOI:10.1038/nature21674

Tassi F, Vai S, Ghirotto S, Lari M, Modi A, Pilli E, Brunelli A, Susca RR, Budnik A, Labuda D, Alberti F, Lalueza-Fox C, Reich D, Caramelli D, Barbujani G. 2017. Genome diversity in the Neolithic Globular Amphorae culture and the spread of Indo-European languages. Proceedings of the Royal Society B: Biological Sciences, 284(1867):20171540. DOI:10.1098/rspb.2017.1540

Slon V, Hopfe C, Weiß CL, Mafessoni F, de la Rasilla M, Lalueza-Fox C, Rosas A, Soressi M, Knul MV, Miller R, Stewart JR, Derevianko AP, Jacobs Z, Li B, Roberts RG, Shunkov MV, de Lumley H, Perrenoud C, Gušić I, Kućan Ž, Rudan P, Aximu-Petri A, Essel E, Nagel S, Nickel B, Schmidt A, Prüfer K, Kelso J, Burbano HA, Pääbo S, Meyer M. 2017. Neandertal and Denisovan DNA from Pleistocene sediments. Science, 356(6338):605-608. DOI:10.1126/science.aam9695

Rosas A, Ríos L, Estalrrich A, Liversidge H, García-Tabernero A, Huguet R, Cardoso H, Bastir M, Lalueza-Fox C, de la Rasilla M, Dean C. 2017. The growth pattern of Neandertals, reconstructed from a juvenile skeleton from El Sidrón (Spain)Science, 359(6380):1282-1287. DOI:10.1126/science.aar3820

Lipson M, Szécsényi-Nagy A, Mallick S, Pósa A, Stégmár B, Keerl V, Rohland N, Stewardson K, Ferry M, Michel M, Oppenheimer J, Broomandkhoshbacht N, Harney E, Nordenfelt S, Llamas B, Gusztáv Mende B, Köhler K, Oross K, Bondár M, Marton T, Osztás A, Jakucs J, Paluch T, Horváth F, Csengeri P, Koós J, Sebők K, Anders A, Raczky P, Regenye J, Barna JP, Fábián S, Serlegi G, Toldi Z, Gyöngyvér Nagy E, Dani J, Molnár E, Pálfi G, Márk L, Melegh B, Bánfai Z, Domboróczki L, Fernández-Eraso J, Antonio Mujika-Alustiza J, Alonso Fernández C, Jiménez Echevarría J, Bollongino R, Orschiedt J, Schierhold K, Meller H, Cooper A, Burger J, Bánffy E, Alt KW, Lalueza-Fox C, Haak W, Reich D. 2017. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature, 551(7680):368-372. DOI:10.1038/nature24476

Gelabert P, Olalde I, De-DIos T, Civit S, Lalueza-Fox C. 2017. Malaria was a weak selective force in ancient Europeans. Scientific Reports, 7(1):1-10. DOI:10.1038/s41598-017-01534-5

Chang D, Knapp M, Enk J, Lippold S, Kircher M, Lister A, MacPhee RD, Widga C, Czechowski P, Sommer R, Hodges E, Stümpel N, Barnes I, Dalén L, Derevianko A, Germonpré M, Hillebrand-Voiculescu A, Constantin S, Kuznetsova T, Mol D, Rathgeber T, Rosendahl W, Tikhonov AN, Willerslev E, Hannon G, Lalueza-Fox C, Joger U, Poinar H, Hofreiter M, Shapiro B. 2017. The evolutionary and phylogeographic history of woolly mammoths: A comprehensive mitogenomic analysis. Scientific Reports, 7:1-10. DOI:10.1038/srep44585

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S. 2016. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530(7591):429-433. DOI:10.1038/nature16544

Gelabert P, Sandoval-Velasco M, Olalde I, Fregel R, Rieux A, Escosa R, Aranda C, Paaijmans K, Mueller I, Gilbert MT, Lalueza-Fox C. 2016. Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences of the United States of America, 113(41):11495-11500. DOI:10.1073/pnas.1611017113

Calafell F, Anglada R, Bonet N, González-Ruiz M, Prats-Muñoz G, Rasal R, Lalueza-Fox C, Bertranpetit J, Malgosa A, Casals F. 2016. An assessment of a massively parallel sequencing approach for the identification of individuals from mass graves of the Spanish Civil War (1936–1939). Electrophoresis, 37(21):2841-2847. DOI:10.1002/elps.201600180

Vai S, Ghirotto S, Pilli E, Tassi F, Lari M, Rizzi E, Matas-Lalueza L, Ramirez O, Lalueza-Fox C, Achilli A, Olivieri A, Torroni A, Lancioni H, Giostra C, Bedini E, Pejrani Baricco L, Matullo G, Di Gaetano C, Piazza A, Veeramah K, Geary P, Caramelli D, Barbujani G. 2015. Genealogical relationships between early medieval and modern inhabitants of piedmont. PLoS ONE, 10(1):1-19. DOI:10.1371/journal.pone.0116801

Sánchez-Quinto F, Lalueza-Fox C. 2015. Almost 20 years of Neanderthal palaeogenetics: Adaptation, admixture, diversity, demography and extinction. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1660). DOI:10.1098/rstb.2013.0374

Ramírez O, Burgos-Paz W, Casas E, Ballester M, Bianco E, Olalde I, Santpere G, Novella V, Gut M, Lalueza-Fox C, Saña M, Pérez-Enciso M. 2015. Genome data from a sixteenth century pig illuminate modern breed relationships. Heredity, 114(2):175-184. DOI:10.1038/hdy.2014.81

Olalde I, Schroeder H, Sandoval-Velasco M, Vinner L, Lobón I, Ramirez O, Civit S, García Borja P, Salazar-García DC, Talamo S, María Fullola J, Xavier Oms F, Pedro M, Martínez P, Sanz M, Daura J, Zilhão J, Marquès-Bonet T, Gilbert MT, Lalueza-Fox C. 2015. A common genetic origin for early farmers from mediterranean cardial and central european LBK cultures. Molecular Biology and Evolution, 32(12):3132-3142. DOI:10.1093/molbev/msv181

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